Strain Fitness in Serratia liquefaciens MT49 around IAI46_10825

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_10820 and IAI46_10825 are separated by 74 nucleotidesIAI46_10825 and IAI46_10830 are separated by 269 nucleotides IAI46_10820: IAI46_10820 - DNA-binding transcriptional regulator KdgR, at 2,288,352 to 2,289,143 _10820 IAI46_10825: IAI46_10825 - phosphonate utilization transcriptional regulator PhnR, at 2,289,218 to 2,289,937 _10825 IAI46_10830: IAI46_10830 - 2-aminoethylphosphonate--pyruvate transaminase, at 2,290,207 to 2,291,310 _10830 Position (kb) 2289 2290Strain fitness (log2 ratio) -2 -1 0 1at 2288.295 kb on - strandat 2288.351 kb on + strandat 2288.624 kb on + strand, within IAI46_10820at 2288.710 kb on - strand, within IAI46_10820at 2288.710 kb on - strand, within IAI46_10820at 2288.717 kb on + strand, within IAI46_10820at 2288.718 kb on - strand, within IAI46_10820at 2288.733 kb on + strand, within IAI46_10820at 2288.734 kb on - strand, within IAI46_10820at 2288.748 kb on + strand, within IAI46_10820at 2288.749 kb on - strand, within IAI46_10820at 2288.859 kb on - strand, within IAI46_10820at 2288.975 kb on + strand, within IAI46_10820at 2289.049 kb on - strand, within IAI46_10820at 2289.072 kb on + strandat 2289.133 kb on - strandat 2289.261 kb on + strandat 2289.261 kb on + strandat 2289.421 kb on - strand, within IAI46_10825at 2289.433 kb on - strand, within IAI46_10825at 2289.455 kb on - strand, within IAI46_10825at 2289.510 kb on + strand, within IAI46_10825at 2289.517 kb on + strand, within IAI46_10825at 2289.518 kb on - strand, within IAI46_10825at 2289.555 kb on + strand, within IAI46_10825at 2289.793 kb on + strand, within IAI46_10825at 2289.794 kb on - strand, within IAI46_10825at 2289.802 kb on + strand, within IAI46_10825at 2289.805 kb on + strand, within IAI46_10825at 2289.907 kb on - strandat 2289.956 kb on + strandat 2289.972 kb on + strandat 2289.973 kb on - strandat 2289.973 kb on - strandat 2289.974 kb on + strandat 2289.974 kb on + strandat 2289.975 kb on - strandat 2289.975 kb on - strandat 2289.976 kb on + strandat 2290.099 kb on + strandat 2290.099 kb on + strandat 2290.099 kb on + strandat 2290.170 kb on + strandat 2290.170 kb on + strandat 2290.171 kb on - strandat 2290.171 kb on - strandat 2290.173 kb on + strandat 2290.287 kb on + strandat 2290.293 kb on + strandat 2290.376 kb on - strand, within IAI46_10830at 2290.425 kb on - strand, within IAI46_10830at 2290.480 kb on + strand, within IAI46_10830at 2290.498 kb on + strand, within IAI46_10830at 2290.611 kb on + strand, within IAI46_10830at 2290.765 kb on + strand, within IAI46_10830at 2290.766 kb on - strand, within IAI46_10830at 2290.786 kb on - strand, within IAI46_10830at 2290.885 kb on + strand, within IAI46_10830at 2290.885 kb on + strand, within IAI46_10830at 2290.885 kb on + strand, within IAI46_10830at 2290.885 kb on + strand, within IAI46_10830at 2290.911 kb on + strand, within IAI46_10830at 2290.912 kb on - strand, within IAI46_10830at 2290.932 kb on + strand, within IAI46_10830

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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2,288,295 - +0.2
2,288,351 + -1.0
2,288,624 + IAI46_10820 0.34 +0.2
2,288,710 - IAI46_10820 0.45 -0.1
2,288,710 - IAI46_10820 0.45 -1.2
2,288,717 + IAI46_10820 0.46 -0.5
2,288,718 - IAI46_10820 0.46 +0.0
2,288,733 + IAI46_10820 0.48 -0.1
2,288,734 - IAI46_10820 0.48 -2.3
2,288,748 + IAI46_10820 0.50 +1.4
2,288,749 - IAI46_10820 0.50 -0.2
2,288,859 - IAI46_10820 0.64 +0.1
2,288,975 + IAI46_10820 0.79 +0.9
2,289,049 - IAI46_10820 0.88 +0.1
2,289,072 + +0.9
2,289,133 - +0.6
2,289,261 + -0.2
2,289,261 + -0.1
2,289,421 - IAI46_10825 0.28 -0.9
2,289,433 - IAI46_10825 0.30 -1.8
2,289,455 - IAI46_10825 0.33 -1.0
2,289,510 + IAI46_10825 0.41 +1.1
2,289,517 + IAI46_10825 0.42 -1.4
2,289,518 - IAI46_10825 0.42 -0.6
2,289,555 + IAI46_10825 0.47 -1.1
2,289,793 + IAI46_10825 0.80 -1.3
2,289,794 - IAI46_10825 0.80 +0.3
2,289,802 + IAI46_10825 0.81 -0.7
2,289,805 + IAI46_10825 0.82 -0.4
2,289,907 - +0.5
2,289,956 + +0.0
2,289,972 + +0.2
2,289,973 - +1.6
2,289,973 - +0.0
2,289,974 + +0.1
2,289,974 + +0.4
2,289,975 - +0.4
2,289,975 - -0.1
2,289,976 + +0.1
2,290,099 + -0.1
2,290,099 + -0.7
2,290,099 + +0.4
2,290,170 + -0.5
2,290,170 + -0.6
2,290,171 - +0.1
2,290,171 - +0.4
2,290,173 + +0.3
2,290,287 + +1.0
2,290,293 + -0.4
2,290,376 - IAI46_10830 0.15 -1.2
2,290,425 - IAI46_10830 0.20 -0.7
2,290,480 + IAI46_10830 0.25 +0.8
2,290,498 + IAI46_10830 0.26 -0.3
2,290,611 + IAI46_10830 0.37 -0.2
2,290,765 + IAI46_10830 0.51 +0.2
2,290,766 - IAI46_10830 0.51 -0.6
2,290,786 - IAI46_10830 0.52 -0.4
2,290,885 + IAI46_10830 0.61 +0.9
2,290,885 + IAI46_10830 0.61 +0.3
2,290,885 + IAI46_10830 0.61 -1.4
2,290,885 + IAI46_10830 0.61 +0.9
2,290,911 + IAI46_10830 0.64 +0.1
2,290,912 - IAI46_10830 0.64 -0.7
2,290,932 + IAI46_10830 0.66 -0.2

Or see this region's nucleotide sequence