Strain Fitness in Serratia liquefaciens MT49 around IAI46_10100

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_10095 and IAI46_10100 are separated by 17 nucleotidesIAI46_10100 and IAI46_10105 are separated by 63 nucleotides IAI46_10095: IAI46_10095 - sugar ABC transporter ATP-binding protein, at 2,128,137 to 2,129,621 _10095 IAI46_10100: IAI46_10100 - ABC transporter permease, at 2,129,639 to 2,130,667 _10100 IAI46_10105: IAI46_10105 - sugar ABC transporter substrate-binding protein, at 2,130,731 to 2,131,648 _10105 Position (kb) 2129 2130 2131Strain fitness (log2 ratio) -3 -2 -1 0 1at 2128.718 kb on + strand, within IAI46_10095at 2128.719 kb on - strand, within IAI46_10095at 2128.722 kb on + strand, within IAI46_10095at 2128.723 kb on - strand, within IAI46_10095at 2128.794 kb on - strand, within IAI46_10095at 2129.020 kb on + strand, within IAI46_10095at 2129.111 kb on + strand, within IAI46_10095at 2129.111 kb on + strand, within IAI46_10095at 2129.215 kb on - strand, within IAI46_10095at 2129.321 kb on + strand, within IAI46_10095at 2129.354 kb on + strand, within IAI46_10095at 2129.442 kb on + strand, within IAI46_10095at 2129.555 kb on + strandat 2129.645 kb on - strandat 2129.720 kb on - strandat 2129.720 kb on - strandat 2129.777 kb on + strand, within IAI46_10100at 2129.777 kb on + strand, within IAI46_10100at 2129.778 kb on - strand, within IAI46_10100at 2130.037 kb on - strand, within IAI46_10100at 2130.037 kb on - strand, within IAI46_10100at 2130.040 kb on + strand, within IAI46_10100at 2130.041 kb on - strand, within IAI46_10100at 2130.041 kb on - strand, within IAI46_10100at 2130.041 kb on - strand, within IAI46_10100at 2130.146 kb on + strand, within IAI46_10100at 2130.146 kb on + strand, within IAI46_10100at 2130.146 kb on + strand, within IAI46_10100at 2130.146 kb on + strand, within IAI46_10100at 2130.147 kb on - strand, within IAI46_10100at 2130.147 kb on - strand, within IAI46_10100at 2130.147 kb on - strand, within IAI46_10100at 2130.147 kb on - strand, within IAI46_10100at 2130.287 kb on + strand, within IAI46_10100at 2130.341 kb on - strand, within IAI46_10100at 2130.344 kb on + strand, within IAI46_10100at 2130.360 kb on - strand, within IAI46_10100at 2130.360 kb on - strand, within IAI46_10100at 2130.360 kb on - strand, within IAI46_10100at 2130.361 kb on + strand, within IAI46_10100at 2130.361 kb on + strand, within IAI46_10100at 2130.362 kb on - strand, within IAI46_10100at 2130.362 kb on - strand, within IAI46_10100at 2130.447 kb on - strand, within IAI46_10100at 2130.447 kb on - strand, within IAI46_10100at 2130.602 kb on - strandat 2130.602 kb on - strandat 2130.769 kb on + strandat 2130.800 kb on - strandat 2130.949 kb on + strand, within IAI46_10105at 2131.036 kb on + strand, within IAI46_10105at 2131.049 kb on + strand, within IAI46_10105at 2131.050 kb on - strand, within IAI46_10105at 2131.050 kb on - strand, within IAI46_10105at 2131.177 kb on - strand, within IAI46_10105at 2131.292 kb on + strand, within IAI46_10105at 2131.293 kb on - strand, within IAI46_10105at 2131.354 kb on + strand, within IAI46_10105at 2131.586 kb on + strandat 2131.657 kb on - strandat 2131.662 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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2,128,718 + IAI46_10095 0.39 +0.8
2,128,719 - IAI46_10095 0.39 -0.7
2,128,722 + IAI46_10095 0.39 -0.5
2,128,723 - IAI46_10095 0.39 +0.4
2,128,794 - IAI46_10095 0.44 +0.3
2,129,020 + IAI46_10095 0.59 +1.0
2,129,111 + IAI46_10095 0.66 +0.2
2,129,111 + IAI46_10095 0.66 -0.8
2,129,215 - IAI46_10095 0.73 +0.3
2,129,321 + IAI46_10095 0.80 +0.6
2,129,354 + IAI46_10095 0.82 +1.4
2,129,442 + IAI46_10095 0.88 -0.4
2,129,555 + -2.1
2,129,645 - -0.4
2,129,720 - +1.2
2,129,720 - -1.2
2,129,777 + IAI46_10100 0.13 +0.0
2,129,777 + IAI46_10100 0.13 +1.1
2,129,778 - IAI46_10100 0.14 +0.3
2,130,037 - IAI46_10100 0.39 +0.1
2,130,037 - IAI46_10100 0.39 +1.1
2,130,040 + IAI46_10100 0.39 -0.2
2,130,041 - IAI46_10100 0.39 -0.4
2,130,041 - IAI46_10100 0.39 -0.0
2,130,041 - IAI46_10100 0.39 -0.2
2,130,146 + IAI46_10100 0.49 +0.3
2,130,146 + IAI46_10100 0.49 -0.4
2,130,146 + IAI46_10100 0.49 +0.7
2,130,146 + IAI46_10100 0.49 +0.8
2,130,147 - IAI46_10100 0.49 -0.4
2,130,147 - IAI46_10100 0.49 +0.2
2,130,147 - IAI46_10100 0.49 -0.1
2,130,147 - IAI46_10100 0.49 -0.9
2,130,287 + IAI46_10100 0.63 +0.5
2,130,341 - IAI46_10100 0.68 +0.5
2,130,344 + IAI46_10100 0.69 +0.4
2,130,360 - IAI46_10100 0.70 +0.2
2,130,360 - IAI46_10100 0.70 -0.5
2,130,360 - IAI46_10100 0.70 +0.1
2,130,361 + IAI46_10100 0.70 +0.8
2,130,361 + IAI46_10100 0.70 -3.5
2,130,362 - IAI46_10100 0.70 -0.0
2,130,362 - IAI46_10100 0.70 +1.1
2,130,447 - IAI46_10100 0.79 +0.9
2,130,447 - IAI46_10100 0.79 -0.9
2,130,602 - -0.9
2,130,602 - +0.6
2,130,769 + +0.4
2,130,800 - +1.1
2,130,949 + IAI46_10105 0.24 +1.0
2,131,036 + IAI46_10105 0.33 +0.3
2,131,049 + IAI46_10105 0.35 +0.1
2,131,050 - IAI46_10105 0.35 +0.1
2,131,050 - IAI46_10105 0.35 -0.3
2,131,177 - IAI46_10105 0.49 +0.1
2,131,292 + IAI46_10105 0.61 +0.2
2,131,293 - IAI46_10105 0.61 -0.8
2,131,354 + IAI46_10105 0.68 +0.9
2,131,586 + +1.6
2,131,657 - +0.8
2,131,662 + +1.0

Or see this region's nucleotide sequence