Strain Fitness in Serratia liquefaciens MT49 around IAI46_08825

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_08820 and IAI46_08825 are separated by 5 nucleotidesIAI46_08825 and IAI46_08830 are separated by 74 nucleotides IAI46_08820: IAI46_08820 - bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL, at 1,892,001 to 1,894,121 _08820 IAI46_08825: IAI46_08825 - ABC transporter ATP-binding protein, at 1,894,127 to 1,896,031 _08825 IAI46_08830: IAI46_08830 - membrane integrity-associated transporter subunit PqiA, at 1,896,106 to 1,897,413 _08830 Position (kb) 1894 1895 1896 1897Strain fitness (log2 ratio) -1 0 1at 1893.262 kb on - strand, within IAI46_08820at 1893.322 kb on + strand, within IAI46_08820at 1893.330 kb on + strand, within IAI46_08820at 1893.471 kb on + strand, within IAI46_08820at 1893.518 kb on + strand, within IAI46_08820at 1893.549 kb on + strand, within IAI46_08820at 1893.593 kb on + strand, within IAI46_08820at 1893.644 kb on + strand, within IAI46_08820at 1893.661 kb on + strand, within IAI46_08820at 1893.713 kb on + strand, within IAI46_08820at 1893.717 kb on + strand, within IAI46_08820at 1893.944 kb on + strandat 1894.119 kb on + strandat 1894.123 kb on + strandat 1894.123 kb on + strandat 1894.126 kb on + strandat 1894.127 kb on - strandat 1894.187 kb on - strandat 1894.484 kb on - strand, within IAI46_08825at 1894.838 kb on + strand, within IAI46_08825at 1894.839 kb on - strand, within IAI46_08825at 1894.839 kb on - strand, within IAI46_08825at 1894.839 kb on - strand, within IAI46_08825at 1894.847 kb on + strand, within IAI46_08825at 1894.847 kb on + strand, within IAI46_08825at 1894.848 kb on - strand, within IAI46_08825at 1894.980 kb on + strand, within IAI46_08825at 1894.999 kb on - strand, within IAI46_08825at 1895.002 kb on + strand, within IAI46_08825at 1895.003 kb on - strand, within IAI46_08825at 1895.254 kb on - strand, within IAI46_08825at 1895.283 kb on - strand, within IAI46_08825at 1895.393 kb on + strand, within IAI46_08825at 1895.394 kb on - strand, within IAI46_08825at 1895.464 kb on + strand, within IAI46_08825at 1895.464 kb on + strand, within IAI46_08825at 1895.759 kb on - strand, within IAI46_08825at 1895.816 kb on + strand, within IAI46_08825at 1895.816 kb on + strand, within IAI46_08825at 1895.816 kb on + strand, within IAI46_08825at 1895.816 kb on + strand, within IAI46_08825at 1895.816 kb on + strand, within IAI46_08825at 1895.817 kb on - strand, within IAI46_08825at 1895.818 kb on + strand, within IAI46_08825at 1895.818 kb on + strand, within IAI46_08825at 1895.818 kb on + strand, within IAI46_08825at 1895.819 kb on - strand, within IAI46_08825at 1896.105 kb on + strandat 1896.217 kb on + strandat 1896.218 kb on - strandat 1896.218 kb on - strandat 1896.218 kb on - strandat 1896.299 kb on - strand, within IAI46_08830at 1896.425 kb on - strand, within IAI46_08830at 1896.425 kb on - strand, within IAI46_08830at 1896.447 kb on + strand, within IAI46_08830at 1896.447 kb on + strand, within IAI46_08830at 1896.458 kb on + strand, within IAI46_08830at 1896.458 kb on + strand, within IAI46_08830at 1896.642 kb on - strand, within IAI46_08830at 1896.668 kb on - strand, within IAI46_08830at 1896.820 kb on - strand, within IAI46_08830at 1896.874 kb on + strand, within IAI46_08830at 1896.874 kb on + strand, within IAI46_08830at 1896.928 kb on - strand, within IAI46_08830at 1896.928 kb on - strand, within IAI46_08830at 1896.938 kb on + strand, within IAI46_08830at 1896.938 kb on - strand, within IAI46_08830at 1896.940 kb on - strand, within IAI46_08830at 1896.960 kb on + strand, within IAI46_08830at 1896.961 kb on - strand, within IAI46_08830at 1896.961 kb on - strand, within IAI46_08830at 1896.963 kb on + strand, within IAI46_08830at 1896.963 kb on + strand, within IAI46_08830at 1896.964 kb on - strand, within IAI46_08830at 1896.964 kb on - strand, within IAI46_08830

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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1,893,262 - IAI46_08820 0.59 -0.7
1,893,322 + IAI46_08820 0.62 +1.0
1,893,330 + IAI46_08820 0.63 +0.2
1,893,471 + IAI46_08820 0.69 +1.4
1,893,518 + IAI46_08820 0.72 +0.1
1,893,549 + IAI46_08820 0.73 +1.2
1,893,593 + IAI46_08820 0.75 +0.6
1,893,644 + IAI46_08820 0.77 +0.4
1,893,661 + IAI46_08820 0.78 -1.0
1,893,713 + IAI46_08820 0.81 +0.8
1,893,717 + IAI46_08820 0.81 -0.4
1,893,944 + +0.5
1,894,119 + -1.6
1,894,123 + +0.6
1,894,123 + -0.6
1,894,126 + -0.3
1,894,127 - +0.7
1,894,187 - -0.3
1,894,484 - IAI46_08825 0.19 +0.8
1,894,838 + IAI46_08825 0.37 +1.4
1,894,839 - IAI46_08825 0.37 -0.2
1,894,839 - IAI46_08825 0.37 +0.8
1,894,839 - IAI46_08825 0.37 -0.3
1,894,847 + IAI46_08825 0.38 +0.6
1,894,847 + IAI46_08825 0.38 +1.0
1,894,848 - IAI46_08825 0.38 +0.4
1,894,980 + IAI46_08825 0.45 +0.1
1,894,999 - IAI46_08825 0.46 -1.5
1,895,002 + IAI46_08825 0.46 -0.1
1,895,003 - IAI46_08825 0.46 +0.4
1,895,254 - IAI46_08825 0.59 -0.7
1,895,283 - IAI46_08825 0.61 +0.5
1,895,393 + IAI46_08825 0.66 -1.4
1,895,394 - IAI46_08825 0.67 -0.2
1,895,464 + IAI46_08825 0.70 +0.1
1,895,464 + IAI46_08825 0.70 +0.7
1,895,759 - IAI46_08825 0.86 +0.8
1,895,816 + IAI46_08825 0.89 -0.8
1,895,816 + IAI46_08825 0.89 -0.3
1,895,816 + IAI46_08825 0.89 +1.2
1,895,816 + IAI46_08825 0.89 +0.8
1,895,816 + IAI46_08825 0.89 -0.0
1,895,817 - IAI46_08825 0.89 +0.4
1,895,818 + IAI46_08825 0.89 +0.6
1,895,818 + IAI46_08825 0.89 -0.7
1,895,818 + IAI46_08825 0.89 +1.0
1,895,819 - IAI46_08825 0.89 +0.3
1,896,105 + +0.2
1,896,217 + -0.5
1,896,218 - +0.4
1,896,218 - +0.6
1,896,218 - -0.8
1,896,299 - IAI46_08830 0.15 +0.7
1,896,425 - IAI46_08830 0.24 +1.1
1,896,425 - IAI46_08830 0.24 +0.3
1,896,447 + IAI46_08830 0.26 -0.7
1,896,447 + IAI46_08830 0.26 +1.0
1,896,458 + IAI46_08830 0.27 -0.2
1,896,458 + IAI46_08830 0.27 +0.2
1,896,642 - IAI46_08830 0.41 -0.6
1,896,668 - IAI46_08830 0.43 -1.0
1,896,820 - IAI46_08830 0.55 -0.2
1,896,874 + IAI46_08830 0.59 +0.8
1,896,874 + IAI46_08830 0.59 +0.6
1,896,928 - IAI46_08830 0.63 +0.8
1,896,928 - IAI46_08830 0.63 +0.7
1,896,938 + IAI46_08830 0.64 -0.9
1,896,938 - IAI46_08830 0.64 +0.8
1,896,940 - IAI46_08830 0.64 +1.5
1,896,960 + IAI46_08830 0.65 +0.5
1,896,961 - IAI46_08830 0.65 -1.2
1,896,961 - IAI46_08830 0.65 +0.6
1,896,963 + IAI46_08830 0.66 +0.5
1,896,963 + IAI46_08830 0.66 +0.5
1,896,964 - IAI46_08830 0.66 +0.3
1,896,964 - IAI46_08830 0.66 -0.2

Or see this region's nucleotide sequence