Strain Fitness in Serratia liquefaciens MT49 around IAI46_08560

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_08555 and IAI46_08560 are separated by 120 nucleotidesIAI46_08560 and IAI46_08565 are separated by 346 nucleotidesIAI46_08565 and IAI46_08570 are separated by 7 nucleotides IAI46_08555: IAI46_08555 - leucine-responsive transcriptional regulator Lrp, at 1,822,594 to 1,823,088 _08555 IAI46_08560: IAI46_08560 - DNA translocase FtsK 4TM domain-containing protein, at 1,823,209 to 1,826,784 _08560 IAI46_08565: IAI46_08565 - outer membrane lipoprotein chaperone LolA, at 1,827,131 to 1,827,742 _08565 IAI46_08570: IAI46_08570 - replication-associated recombination protein A, at 1,827,750 to 1,829,093 _08570 Position (kb) 1823 1824 1825 1826 1827Strain fitness (log2 ratio) -2 -1 0 1 2at 1822.217 kb on - strandat 1822.232 kb on + strandat 1822.294 kb on + strandat 1822.295 kb on - strandat 1822.325 kb on + strandat 1822.432 kb on + strandat 1822.495 kb on + strandat 1822.532 kb on + strandat 1822.590 kb on - strandat 1822.590 kb on - strandat 1822.592 kb on + strandat 1822.606 kb on - strandat 1822.677 kb on + strand, within IAI46_08555at 1822.677 kb on + strand, within IAI46_08555at 1822.677 kb on + strand, within IAI46_08555at 1822.730 kb on + strand, within IAI46_08555at 1822.731 kb on - strand, within IAI46_08555at 1822.798 kb on + strand, within IAI46_08555at 1822.798 kb on + strand, within IAI46_08555at 1822.977 kb on + strand, within IAI46_08555at 1822.978 kb on - strand, within IAI46_08555at 1823.028 kb on + strand, within IAI46_08555at 1823.028 kb on + strand, within IAI46_08555at 1823.028 kb on + strand, within IAI46_08555at 1823.028 kb on + strand, within IAI46_08555at 1823.032 kb on + strand, within IAI46_08555at 1823.039 kb on + strandat 1823.176 kb on + strandat 1823.176 kb on + strandat 1823.176 kb on + strandat 1823.185 kb on + strandat 1823.297 kb on + strandat 1826.808 kb on - strandat 1826.813 kb on + strandat 1826.898 kb on + strandat 1826.899 kb on - strandat 1826.899 kb on - strandat 1826.921 kb on + strandat 1826.921 kb on + strandat 1826.999 kb on - strandat 1827.056 kb on + strandat 1827.065 kb on + strandat 1827.115 kb on + strandat 1827.115 kb on + strandat 1827.755 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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1,822,217 - +0.4
1,822,232 + -1.1
1,822,294 + +0.0
1,822,295 - -0.6
1,822,325 + -0.0
1,822,432 + +0.2
1,822,495 + +0.2
1,822,532 + +0.6
1,822,590 - -1.0
1,822,590 - +0.3
1,822,592 + -1.4
1,822,606 - +0.6
1,822,677 + IAI46_08555 0.17 -0.7
1,822,677 + IAI46_08555 0.17 -0.5
1,822,677 + IAI46_08555 0.17 -0.1
1,822,730 + IAI46_08555 0.27 -0.0
1,822,731 - IAI46_08555 0.28 -0.7
1,822,798 + IAI46_08555 0.41 -0.8
1,822,798 + IAI46_08555 0.41 +0.0
1,822,977 + IAI46_08555 0.77 -0.0
1,822,978 - IAI46_08555 0.78 +0.6
1,823,028 + IAI46_08555 0.88 -1.8
1,823,028 + IAI46_08555 0.88 -1.1
1,823,028 + IAI46_08555 0.88 -0.7
1,823,028 + IAI46_08555 0.88 -1.0
1,823,032 + IAI46_08555 0.88 -0.8
1,823,039 + -0.8
1,823,176 + -1.9
1,823,176 + -0.9
1,823,176 + +0.2
1,823,185 + +2.7
1,823,297 + +0.1
1,826,808 - +0.5
1,826,813 + +0.6
1,826,898 + +1.9
1,826,899 - +0.9
1,826,899 - +1.0
1,826,921 + -0.3
1,826,921 + +1.6
1,826,999 - -0.4
1,827,056 + +1.3
1,827,065 + +0.5
1,827,115 + -0.2
1,827,115 + +0.1
1,827,755 + -2.0

Or see this region's nucleotide sequence