Strain Fitness in Serratia liquefaciens MT49 around IAI46_07460

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_07455 and IAI46_07460 overlap by 42 nucleotidesIAI46_07460 and IAI46_07465 are separated by 113 nucleotides IAI46_07455: IAI46_07455 - DMT family transporter, at 1,575,709 to 1,576,623 _07455 IAI46_07460: IAI46_07460 - DHA2 family efflux MFS transporter permease subunit, at 1,576,582 to 1,577,934 _07460 IAI46_07465: IAI46_07465 - LysR family transcriptional regulator, at 1,578,048 to 1,578,962 _07465 Position (kb) 1576 1577 1578Strain fitness (log2 ratio) -2 -1 0 1 2at 1575.677 kb on + strandat 1575.685 kb on + strandat 1575.685 kb on + strandat 1575.691 kb on + strandat 1575.692 kb on - strandat 1575.722 kb on + strandat 1575.904 kb on - strand, within IAI46_07455at 1575.904 kb on - strand, within IAI46_07455at 1575.907 kb on - strand, within IAI46_07455at 1575.948 kb on + strand, within IAI46_07455at 1575.974 kb on - strand, within IAI46_07455at 1575.974 kb on - strand, within IAI46_07455at 1576.009 kb on + strand, within IAI46_07455at 1576.010 kb on - strand, within IAI46_07455at 1576.010 kb on - strand, within IAI46_07455at 1576.010 kb on - strand, within IAI46_07455at 1576.011 kb on + strand, within IAI46_07455at 1576.012 kb on - strand, within IAI46_07455at 1576.078 kb on - strand, within IAI46_07455at 1576.078 kb on - strand, within IAI46_07455at 1576.094 kb on + strand, within IAI46_07455at 1576.095 kb on - strand, within IAI46_07455at 1576.162 kb on + strand, within IAI46_07455at 1576.275 kb on - strand, within IAI46_07455at 1576.344 kb on + strand, within IAI46_07455at 1576.345 kb on - strand, within IAI46_07455at 1576.345 kb on - strand, within IAI46_07455at 1576.365 kb on - strand, within IAI46_07455at 1576.365 kb on - strand, within IAI46_07455at 1576.384 kb on + strand, within IAI46_07455at 1576.384 kb on + strand, within IAI46_07455at 1576.384 kb on + strand, within IAI46_07455at 1576.384 kb on + strand, within IAI46_07455at 1576.384 kb on + strand, within IAI46_07455at 1576.384 kb on + strand, within IAI46_07455at 1576.385 kb on - strand, within IAI46_07455at 1576.385 kb on - strand, within IAI46_07455at 1576.385 kb on - strand, within IAI46_07455at 1576.385 kb on - strand, within IAI46_07455at 1576.662 kb on - strandat 1577.048 kb on + strand, within IAI46_07460at 1577.308 kb on + strand, within IAI46_07460at 1577.309 kb on - strand, within IAI46_07460at 1577.565 kb on - strand, within IAI46_07460at 1577.565 kb on - strand, within IAI46_07460at 1577.676 kb on - strand, within IAI46_07460at 1577.676 kb on - strand, within IAI46_07460at 1577.697 kb on - strand, within IAI46_07460at 1577.697 kb on - strand, within IAI46_07460at 1577.697 kb on - strand, within IAI46_07460at 1577.697 kb on - strand, within IAI46_07460at 1577.770 kb on + strand, within IAI46_07460at 1577.770 kb on + strand, within IAI46_07460at 1577.771 kb on - strand, within IAI46_07460at 1577.817 kb on + strandat 1577.817 kb on + strandat 1577.818 kb on - strandat 1577.820 kb on + strandat 1577.821 kb on - strandat 1577.887 kb on + strandat 1577.887 kb on + strandat 1577.888 kb on - strandat 1577.934 kb on + strandat 1577.970 kb on + strandat 1578.011 kb on + strandat 1578.012 kb on - strandat 1578.044 kb on + strandat 1578.045 kb on - strandat 1578.068 kb on - strandat 1578.068 kb on - strandat 1578.113 kb on + strandat 1578.252 kb on + strand, within IAI46_07465at 1578.550 kb on + strand, within IAI46_07465at 1578.635 kb on - strand, within IAI46_07465at 1578.635 kb on - strand, within IAI46_07465at 1578.651 kb on - strand, within IAI46_07465at 1578.684 kb on - strand, within IAI46_07465at 1578.728 kb on + strand, within IAI46_07465

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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1,575,677 + +0.5
1,575,685 + +0.8
1,575,685 + +1.2
1,575,691 + +0.4
1,575,692 - +0.1
1,575,722 + +0.2
1,575,904 - IAI46_07455 0.21 +0.8
1,575,904 - IAI46_07455 0.21 +2.1
1,575,907 - IAI46_07455 0.22 +0.0
1,575,948 + IAI46_07455 0.26 -0.5
1,575,974 - IAI46_07455 0.29 +0.1
1,575,974 - IAI46_07455 0.29 -1.0
1,576,009 + IAI46_07455 0.33 +0.9
1,576,010 - IAI46_07455 0.33 +0.8
1,576,010 - IAI46_07455 0.33 +1.0
1,576,010 - IAI46_07455 0.33 +0.0
1,576,011 + IAI46_07455 0.33 -0.9
1,576,012 - IAI46_07455 0.33 -2.1
1,576,078 - IAI46_07455 0.40 +1.5
1,576,078 - IAI46_07455 0.40 +0.0
1,576,094 + IAI46_07455 0.42 +0.2
1,576,095 - IAI46_07455 0.42 +0.2
1,576,162 + IAI46_07455 0.50 +0.2
1,576,275 - IAI46_07455 0.62 -0.6
1,576,344 + IAI46_07455 0.69 +0.0
1,576,345 - IAI46_07455 0.70 -0.5
1,576,345 - IAI46_07455 0.70 -0.7
1,576,365 - IAI46_07455 0.72 -1.2
1,576,365 - IAI46_07455 0.72 +0.8
1,576,384 + IAI46_07455 0.74 -2.0
1,576,384 + IAI46_07455 0.74 +1.1
1,576,384 + IAI46_07455 0.74 -0.2
1,576,384 + IAI46_07455 0.74 +1.0
1,576,384 + IAI46_07455 0.74 -0.1
1,576,384 + IAI46_07455 0.74 -0.9
1,576,385 - IAI46_07455 0.74 +0.2
1,576,385 - IAI46_07455 0.74 -1.2
1,576,385 - IAI46_07455 0.74 +1.4
1,576,385 - IAI46_07455 0.74 +0.0
1,576,662 - -0.2
1,577,048 + IAI46_07460 0.34 +1.0
1,577,308 + IAI46_07460 0.54 +0.5
1,577,309 - IAI46_07460 0.54 -0.6
1,577,565 - IAI46_07460 0.73 +1.3
1,577,565 - IAI46_07460 0.73 -0.5
1,577,676 - IAI46_07460 0.81 -0.8
1,577,676 - IAI46_07460 0.81 +0.6
1,577,697 - IAI46_07460 0.82 +0.4
1,577,697 - IAI46_07460 0.82 +0.6
1,577,697 - IAI46_07460 0.82 +0.1
1,577,697 - IAI46_07460 0.82 +0.4
1,577,770 + IAI46_07460 0.88 +0.5
1,577,770 + IAI46_07460 0.88 -0.1
1,577,771 - IAI46_07460 0.88 -0.6
1,577,817 + +0.5
1,577,817 + +1.9
1,577,818 - +0.5
1,577,820 + +0.6
1,577,821 - -1.9
1,577,887 + -0.3
1,577,887 + -0.5
1,577,888 - +0.3
1,577,934 + -0.1
1,577,970 + +0.9
1,578,011 + +0.8
1,578,012 - -0.5
1,578,044 + +1.0
1,578,045 - -0.2
1,578,068 - -1.2
1,578,068 - -0.3
1,578,113 + +0.0
1,578,252 + IAI46_07465 0.22 +0.6
1,578,550 + IAI46_07465 0.55 -0.3
1,578,635 - IAI46_07465 0.64 +0.2
1,578,635 - IAI46_07465 0.64 -0.5
1,578,651 - IAI46_07465 0.66 -1.0
1,578,684 - IAI46_07465 0.70 +0.1
1,578,728 + IAI46_07465 0.74 +0.7

Or see this region's nucleotide sequence