Strain Fitness in Serratia liquefaciens MT49 around IAI46_07370

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_07365 and IAI46_07370 are separated by 73 nucleotidesIAI46_07370 and IAI46_07375 overlap by 4 nucleotidesIAI46_07375 and IAI46_07380 are separated by 14 nucleotides IAI46_07365: IAI46_07365 - ABC transporter substrate-binding protein, at 1,558,890 to 1,559,822 _07365 IAI46_07370: IAI46_07370 - ABC transporter permease, at 1,559,896 to 1,561,056 _07370 IAI46_07375: IAI46_07375 - ABC transporter ATP-binding protein, at 1,561,053 to 1,561,988 _07375 IAI46_07380: IAI46_07380 - ABC transporter permease, at 1,562,003 to 1,562,761 _07380 Position (kb) 1559 1560 1561 1562Strain fitness (log2 ratio) -1 0 1at 1558.906 kb on + strandat 1558.906 kb on + strandat 1558.907 kb on - strandat 1558.907 kb on - strandat 1558.907 kb on - strandat 1558.907 kb on - strandat 1558.940 kb on - strandat 1559.136 kb on + strand, within IAI46_07365at 1559.146 kb on - strand, within IAI46_07365at 1559.146 kb on - strand, within IAI46_07365at 1559.286 kb on - strand, within IAI46_07365at 1559.294 kb on + strand, within IAI46_07365at 1559.294 kb on + strand, within IAI46_07365at 1559.294 kb on + strand, within IAI46_07365at 1559.295 kb on - strand, within IAI46_07365at 1559.295 kb on - strand, within IAI46_07365at 1559.453 kb on + strand, within IAI46_07365at 1559.510 kb on + strand, within IAI46_07365at 1559.557 kb on - strand, within IAI46_07365at 1559.876 kb on + strandat 1559.902 kb on - strandat 1559.921 kb on + strandat 1559.924 kb on + strandat 1559.925 kb on - strandat 1559.981 kb on - strandat 1560.053 kb on + strand, within IAI46_07370at 1560.216 kb on + strand, within IAI46_07370at 1560.322 kb on - strand, within IAI46_07370at 1560.397 kb on + strand, within IAI46_07370at 1560.401 kb on - strand, within IAI46_07370at 1560.401 kb on - strand, within IAI46_07370at 1560.448 kb on - strand, within IAI46_07370at 1560.448 kb on - strand, within IAI46_07370at 1560.448 kb on - strand, within IAI46_07370at 1560.694 kb on + strand, within IAI46_07370at 1560.695 kb on - strand, within IAI46_07370at 1560.695 kb on - strand, within IAI46_07370at 1561.023 kb on + strandat 1561.184 kb on - strand, within IAI46_07375at 1561.287 kb on + strand, within IAI46_07375at 1561.288 kb on - strand, within IAI46_07375at 1561.288 kb on - strand, within IAI46_07375at 1561.621 kb on + strand, within IAI46_07375at 1561.844 kb on + strand, within IAI46_07375at 1561.844 kb on + strand, within IAI46_07375at 1561.845 kb on - strand, within IAI46_07375at 1561.845 kb on - strand, within IAI46_07375

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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1,558,906 + -0.8
1,558,906 + -1.3
1,558,907 - +1.1
1,558,907 - -0.5
1,558,907 - -0.1
1,558,907 - -0.1
1,558,940 - +0.3
1,559,136 + IAI46_07365 0.26 -1.3
1,559,146 - IAI46_07365 0.27 +0.2
1,559,146 - IAI46_07365 0.27 -0.6
1,559,286 - IAI46_07365 0.42 -1.5
1,559,294 + IAI46_07365 0.43 -0.0
1,559,294 + IAI46_07365 0.43 -0.0
1,559,294 + IAI46_07365 0.43 +0.6
1,559,295 - IAI46_07365 0.43 -1.0
1,559,295 - IAI46_07365 0.43 +0.7
1,559,453 + IAI46_07365 0.60 -0.4
1,559,510 + IAI46_07365 0.66 -0.7
1,559,557 - IAI46_07365 0.71 +0.6
1,559,876 + +0.1
1,559,902 - -0.9
1,559,921 + +0.2
1,559,924 + -0.7
1,559,925 - +0.4
1,559,981 - +0.3
1,560,053 + IAI46_07370 0.14 -0.8
1,560,216 + IAI46_07370 0.28 -0.3
1,560,322 - IAI46_07370 0.37 +0.9
1,560,397 + IAI46_07370 0.43 +0.4
1,560,401 - IAI46_07370 0.43 -0.0
1,560,401 - IAI46_07370 0.43 +0.1
1,560,448 - IAI46_07370 0.48 +0.2
1,560,448 - IAI46_07370 0.48 -0.3
1,560,448 - IAI46_07370 0.48 -1.0
1,560,694 + IAI46_07370 0.69 +0.3
1,560,695 - IAI46_07370 0.69 +0.3
1,560,695 - IAI46_07370 0.69 -1.5
1,561,023 + +0.4
1,561,184 - IAI46_07375 0.14 +0.8
1,561,287 + IAI46_07375 0.25 +0.2
1,561,288 - IAI46_07375 0.25 -0.8
1,561,288 - IAI46_07375 0.25 +0.8
1,561,621 + IAI46_07375 0.61 -0.3
1,561,844 + IAI46_07375 0.85 +0.4
1,561,844 + IAI46_07375 0.85 -0.1
1,561,845 - IAI46_07375 0.85 -0.1
1,561,845 - IAI46_07375 0.85 -0.3

Or see this region's nucleotide sequence