Strain Fitness in Serratia liquefaciens MT49 around IAI46_07185

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_07175 and IAI46_07180 are separated by 279 nucleotidesIAI46_07180 and IAI46_07185 are separated by 104 nucleotidesIAI46_07185 and IAI46_07190 are separated by 483 nucleotides IAI46_07175: IAI46_07175 - peptidase M60 viral enhancin protein, at 1,514,188 to 1,516,755 _07175 IAI46_07180: IAI46_07180 - DUF1456 family protein, at 1,517,035 to 1,517,499 _07180 IAI46_07185: IAI46_07185 - Tar ligand binding domain-containing protein, at 1,517,604 to 1,519,250 _07185 IAI46_07190: IAI46_07190 - FAD/NAD(P)-binding protein, at 1,519,734 to 1,521,128 _07190 Position (kb) 1517 1518 1519 1520Strain fitness (log2 ratio) -1 0 1at 1516.659 kb on + strandat 1516.660 kb on - strandat 1516.701 kb on + strandat 1516.714 kb on + strandat 1516.715 kb on - strandat 1516.715 kb on - strandat 1516.770 kb on - strandat 1516.817 kb on + strandat 1516.820 kb on + strandat 1516.820 kb on + strandat 1516.876 kb on + strandat 1516.877 kb on - strandat 1516.883 kb on + strandat 1516.883 kb on + strandat 1516.883 kb on + strandat 1516.883 kb on + strandat 1516.883 kb on + strandat 1516.885 kb on + strandat 1516.885 kb on + strandat 1516.885 kb on + strandat 1516.885 kb on + strandat 1516.885 kb on + strandat 1516.885 kb on + strandat 1516.885 kb on + strandat 1516.885 kb on + strandat 1516.885 kb on + strandat 1516.885 kb on + strandat 1516.885 kb on + strandat 1516.885 kb on + strandat 1516.885 kb on + strandat 1516.885 kb on + strandat 1516.885 kb on + strandat 1516.885 kb on + strandat 1516.885 kb on + strandat 1516.886 kb on - strandat 1516.886 kb on - strandat 1516.886 kb on - strandat 1516.886 kb on - strandat 1516.886 kb on - strandat 1516.886 kb on - strandat 1516.886 kb on - strandat 1516.887 kb on + strandat 1516.887 kb on + strandat 1516.887 kb on + strandat 1516.887 kb on + strandat 1516.887 kb on + strandat 1516.888 kb on - strandat 1516.888 kb on - strandat 1516.888 kb on - strandat 1516.946 kb on + strandat 1516.947 kb on - strandat 1516.960 kb on + strandat 1516.960 kb on + strandat 1516.960 kb on + strandat 1516.961 kb on - strandat 1516.961 kb on - strandat 1516.980 kb on + strandat 1517.022 kb on + strandat 1517.023 kb on - strandat 1517.023 kb on - strandat 1517.035 kb on - strandat 1517.035 kb on - strandat 1517.068 kb on + strandat 1517.069 kb on - strandat 1517.080 kb on - strandat 1517.082 kb on + strand, within IAI46_07180at 1517.083 kb on - strand, within IAI46_07180at 1517.152 kb on + strand, within IAI46_07180at 1517.152 kb on + strand, within IAI46_07180at 1517.367 kb on - strand, within IAI46_07180at 1517.393 kb on + strand, within IAI46_07180at 1517.393 kb on + strand, within IAI46_07180at 1517.497 kb on + strandat 1517.567 kb on + strandat 1517.593 kb on + strandat 1517.594 kb on - strandat 1517.597 kb on + strandat 1517.663 kb on + strandat 1517.709 kb on + strandat 1517.817 kb on - strand, within IAI46_07185at 1517.994 kb on - strand, within IAI46_07185at 1518.231 kb on - strand, within IAI46_07185at 1518.427 kb on + strand, within IAI46_07185at 1518.428 kb on - strand, within IAI46_07185at 1518.485 kb on + strand, within IAI46_07185at 1518.486 kb on - strand, within IAI46_07185at 1518.521 kb on + strand, within IAI46_07185at 1518.729 kb on - strand, within IAI46_07185at 1518.729 kb on - strand, within IAI46_07185at 1518.746 kb on - strand, within IAI46_07185at 1518.746 kb on - strand, within IAI46_07185at 1518.746 kb on - strand, within IAI46_07185at 1518.792 kb on - strand, within IAI46_07185at 1518.792 kb on - strand, within IAI46_07185at 1518.792 kb on - strand, within IAI46_07185at 1518.801 kb on - strand, within IAI46_07185at 1518.801 kb on - strand, within IAI46_07185at 1518.846 kb on + strand, within IAI46_07185at 1518.846 kb on + strand, within IAI46_07185at 1519.081 kb on + strand, within IAI46_07185at 1519.082 kb on - strand, within IAI46_07185at 1519.183 kb on - strandat 1519.201 kb on - strandat 1519.250 kb on + strandat 1519.251 kb on - strandat 1519.253 kb on + strandat 1519.253 kb on + strandat 1519.381 kb on + strandat 1519.384 kb on + strandat 1519.422 kb on - strandat 1519.450 kb on - strandat 1519.452 kb on + strandat 1519.452 kb on + strandat 1519.457 kb on - strandat 1519.474 kb on + strandat 1519.524 kb on - strandat 1519.547 kb on - strandat 1519.563 kb on + strandat 1519.659 kb on - strandat 1519.675 kb on + strandat 1519.701 kb on - strandat 1519.858 kb on + strandat 1519.979 kb on + strand, within IAI46_07190at 1520.021 kb on + strand, within IAI46_07190at 1520.030 kb on + strand, within IAI46_07190at 1520.100 kb on + strand, within IAI46_07190at 1520.136 kb on - strand, within IAI46_07190at 1520.136 kb on - strand, within IAI46_07190at 1520.136 kb on - strand, within IAI46_07190at 1520.230 kb on - strand, within IAI46_07190

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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1,516,659 + +0.4
1,516,660 - -0.4
1,516,701 + -0.3
1,516,714 + +0.3
1,516,715 - +1.3
1,516,715 - +0.7
1,516,770 - -0.2
1,516,817 + +0.4
1,516,820 + +0.3
1,516,820 + -0.5
1,516,876 + -0.2
1,516,877 - +0.5
1,516,883 + -0.7
1,516,883 + +0.5
1,516,883 + +0.8
1,516,883 + +0.8
1,516,883 + -0.7
1,516,885 + +0.8
1,516,885 + +0.8
1,516,885 + -0.1
1,516,885 + +0.6
1,516,885 + +0.3
1,516,885 + +1.4
1,516,885 + +1.1
1,516,885 + -0.1
1,516,885 + -0.0
1,516,885 + +0.7
1,516,885 + -0.0
1,516,885 + -0.0
1,516,885 + +1.2
1,516,885 + -0.8
1,516,885 + -0.6
1,516,885 + +1.1
1,516,885 + -1.7
1,516,886 - +1.1
1,516,886 - +0.4
1,516,886 - +0.4
1,516,886 - -0.6
1,516,886 - -0.0
1,516,886 - +0.4
1,516,886 - +1.4
1,516,887 + +0.2
1,516,887 + -0.1
1,516,887 + +1.1
1,516,887 + +1.0
1,516,887 + -0.1
1,516,888 - -0.8
1,516,888 - -1.3
1,516,888 - -1.4
1,516,946 + -1.2
1,516,947 - -0.3
1,516,960 + -1.2
1,516,960 + +1.6
1,516,960 + -0.1
1,516,961 - -0.0
1,516,961 - -0.5
1,516,980 + -1.3
1,517,022 + -0.8
1,517,023 - -0.6
1,517,023 - +0.9
1,517,035 - -1.1
1,517,035 - +0.9
1,517,068 + -1.6
1,517,069 - -0.3
1,517,080 - +1.0
1,517,082 + IAI46_07180 0.10 -1.2
1,517,083 - IAI46_07180 0.10 -0.5
1,517,152 + IAI46_07180 0.25 -0.2
1,517,152 + IAI46_07180 0.25 +0.3
1,517,367 - IAI46_07180 0.71 -0.3
1,517,393 + IAI46_07180 0.77 -0.8
1,517,393 + IAI46_07180 0.77 +0.1
1,517,497 + +0.6
1,517,567 + -0.0
1,517,593 + +1.2
1,517,594 - -0.9
1,517,597 + -0.5
1,517,663 + +0.3
1,517,709 + +0.5
1,517,817 - IAI46_07185 0.13 +0.2
1,517,994 - IAI46_07185 0.24 +0.0
1,518,231 - IAI46_07185 0.38 +0.5
1,518,427 + IAI46_07185 0.50 +0.8
1,518,428 - IAI46_07185 0.50 +0.5
1,518,485 + IAI46_07185 0.53 -1.7
1,518,486 - IAI46_07185 0.54 +0.2
1,518,521 + IAI46_07185 0.56 +0.3
1,518,729 - IAI46_07185 0.68 -0.5
1,518,729 - IAI46_07185 0.68 -0.4
1,518,746 - IAI46_07185 0.69 -0.9
1,518,746 - IAI46_07185 0.69 +1.3
1,518,746 - IAI46_07185 0.69 +0.1
1,518,792 - IAI46_07185 0.72 +0.2
1,518,792 - IAI46_07185 0.72 +0.2
1,518,792 - IAI46_07185 0.72 +0.0
1,518,801 - IAI46_07185 0.73 +0.3
1,518,801 - IAI46_07185 0.73 -0.3
1,518,846 + IAI46_07185 0.75 +0.5
1,518,846 + IAI46_07185 0.75 +1.3
1,519,081 + IAI46_07185 0.90 +0.3
1,519,082 - IAI46_07185 0.90 +1.0
1,519,183 - +1.1
1,519,201 - -1.2
1,519,250 + +0.0
1,519,251 - -0.2
1,519,253 + +1.2
1,519,253 + +0.7
1,519,381 + -0.3
1,519,384 + +1.4
1,519,422 - -0.2
1,519,450 - -0.6
1,519,452 + +0.9
1,519,452 + -0.5
1,519,457 - +0.1
1,519,474 + +0.1
1,519,524 - +0.8
1,519,547 - -0.8
1,519,563 + +0.2
1,519,659 - -0.2
1,519,675 + -0.1
1,519,701 - +0.6
1,519,858 + -0.4
1,519,979 + IAI46_07190 0.18 -0.7
1,520,021 + IAI46_07190 0.21 -0.9
1,520,030 + IAI46_07190 0.21 +0.5
1,520,100 + IAI46_07190 0.26 +0.1
1,520,136 - IAI46_07190 0.29 -1.3
1,520,136 - IAI46_07190 0.29 -0.0
1,520,136 - IAI46_07190 0.29 +0.1
1,520,230 - IAI46_07190 0.36 +0.6

Or see this region's nucleotide sequence