Strain Fitness in Serratia liquefaciens MT49 around IAI46_06635

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06630 and IAI46_06635 are separated by 160 nucleotidesIAI46_06635 and IAI46_06640 are separated by 12 nucleotidesIAI46_06640 and IAI46_06645 are separated by 25 nucleotides IAI46_06630: IAI46_06630 - MFS transporter, at 1,412,439 to 1,414,043 _06630 IAI46_06635: IAI46_06635 - IclR family transcriptional regulator, at 1,414,204 to 1,414,983 _06635 IAI46_06640: IAI46_06640 - universal stress protein, at 1,414,996 to 1,415,445 _06640 IAI46_06645: IAI46_06645 - D-2-hydroxyacid dehydrogenase family protein, at 1,415,471 to 1,416,430 _06645 Position (kb) 1414 1415Strain fitness (log2 ratio) -2 -1 0 1 2at 1413.206 kb on + strand, within IAI46_06630at 1413.263 kb on - strand, within IAI46_06630at 1413.263 kb on - strand, within IAI46_06630at 1413.429 kb on + strand, within IAI46_06630at 1413.444 kb on + strand, within IAI46_06630at 1413.444 kb on + strand, within IAI46_06630at 1413.503 kb on + strand, within IAI46_06630at 1413.598 kb on + strand, within IAI46_06630at 1413.613 kb on + strand, within IAI46_06630at 1413.733 kb on - strand, within IAI46_06630at 1413.854 kb on - strand, within IAI46_06630at 1414.043 kb on + strandat 1414.043 kb on + strandat 1414.044 kb on - strandat 1414.044 kb on - strandat 1414.044 kb on - strandat 1414.110 kb on - strandat 1414.127 kb on - strandat 1414.215 kb on + strandat 1414.215 kb on + strandat 1414.215 kb on + strandat 1414.216 kb on - strandat 1414.216 kb on - strandat 1414.216 kb on - strandat 1414.222 kb on + strandat 1414.222 kb on + strandat 1414.222 kb on + strandat 1414.222 kb on + strandat 1414.223 kb on - strandat 1414.260 kb on + strandat 1414.365 kb on + strand, within IAI46_06635at 1414.365 kb on + strand, within IAI46_06635at 1414.366 kb on - strand, within IAI46_06635at 1414.388 kb on + strand, within IAI46_06635at 1414.388 kb on + strand, within IAI46_06635at 1414.458 kb on - strand, within IAI46_06635at 1414.458 kb on - strand, within IAI46_06635at 1414.461 kb on + strand, within IAI46_06635at 1414.512 kb on + strand, within IAI46_06635at 1414.526 kb on + strand, within IAI46_06635at 1414.527 kb on - strand, within IAI46_06635at 1414.630 kb on + strand, within IAI46_06635at 1414.630 kb on + strand, within IAI46_06635at 1414.630 kb on + strand, within IAI46_06635at 1414.630 kb on + strand, within IAI46_06635at 1414.630 kb on + strand, within IAI46_06635at 1414.705 kb on + strand, within IAI46_06635at 1414.790 kb on - strand, within IAI46_06635at 1414.845 kb on + strand, within IAI46_06635at 1414.846 kb on - strand, within IAI46_06635at 1415.040 kb on + strandat 1415.099 kb on + strand, within IAI46_06640at 1415.099 kb on + strand, within IAI46_06640at 1415.099 kb on + strand, within IAI46_06640at 1415.100 kb on - strand, within IAI46_06640at 1415.120 kb on - strand, within IAI46_06640at 1415.138 kb on - strand, within IAI46_06640at 1415.210 kb on + strand, within IAI46_06640at 1415.268 kb on - strand, within IAI46_06640at 1415.268 kb on - strand, within IAI46_06640at 1415.307 kb on + strand, within IAI46_06640at 1415.331 kb on + strand, within IAI46_06640at 1415.331 kb on + strand, within IAI46_06640at 1415.331 kb on + strand, within IAI46_06640at 1415.332 kb on - strand, within IAI46_06640at 1415.334 kb on + strand, within IAI46_06640at 1415.399 kb on + strand, within IAI46_06640at 1415.501 kb on + strandat 1415.502 kb on - strandat 1415.502 kb on - strandat 1415.837 kb on - strand, within IAI46_06645

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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1,413,206 + IAI46_06630 0.48 -1.2
1,413,263 - IAI46_06630 0.51 -0.3
1,413,263 - IAI46_06630 0.51 +0.6
1,413,429 + IAI46_06630 0.62 -0.6
1,413,444 + IAI46_06630 0.63 -1.8
1,413,444 + IAI46_06630 0.63 -0.1
1,413,503 + IAI46_06630 0.66 +1.3
1,413,598 + IAI46_06630 0.72 +0.7
1,413,613 + IAI46_06630 0.73 +0.2
1,413,733 - IAI46_06630 0.81 +0.1
1,413,854 - IAI46_06630 0.88 +1.2
1,414,043 + +0.2
1,414,043 + -2.6
1,414,044 - -1.2
1,414,044 - +0.8
1,414,044 - +0.1
1,414,110 - +0.9
1,414,127 - +0.3
1,414,215 + -0.2
1,414,215 + +0.2
1,414,215 + +0.0
1,414,216 - -0.9
1,414,216 - +1.9
1,414,216 - +0.3
1,414,222 + -0.1
1,414,222 + -0.9
1,414,222 + -0.5
1,414,222 + +0.3
1,414,223 - +1.6
1,414,260 + -0.7
1,414,365 + IAI46_06635 0.21 +0.5
1,414,365 + IAI46_06635 0.21 -0.1
1,414,366 - IAI46_06635 0.21 +0.3
1,414,388 + IAI46_06635 0.24 -0.4
1,414,388 + IAI46_06635 0.24 +0.5
1,414,458 - IAI46_06635 0.33 +0.3
1,414,458 - IAI46_06635 0.33 -1.7
1,414,461 + IAI46_06635 0.33 +0.6
1,414,512 + IAI46_06635 0.39 +0.3
1,414,526 + IAI46_06635 0.41 +0.2
1,414,527 - IAI46_06635 0.41 +0.9
1,414,630 + IAI46_06635 0.55 +0.9
1,414,630 + IAI46_06635 0.55 -0.3
1,414,630 + IAI46_06635 0.55 +0.1
1,414,630 + IAI46_06635 0.55 +0.8
1,414,630 + IAI46_06635 0.55 +0.3
1,414,705 + IAI46_06635 0.64 -0.2
1,414,790 - IAI46_06635 0.75 +0.6
1,414,845 + IAI46_06635 0.82 +0.7
1,414,846 - IAI46_06635 0.82 -0.3
1,415,040 + +0.2
1,415,099 + IAI46_06640 0.23 -0.4
1,415,099 + IAI46_06640 0.23 +0.3
1,415,099 + IAI46_06640 0.23 -0.1
1,415,100 - IAI46_06640 0.23 +0.7
1,415,120 - IAI46_06640 0.28 +0.7
1,415,138 - IAI46_06640 0.32 -0.8
1,415,210 + IAI46_06640 0.48 -1.6
1,415,268 - IAI46_06640 0.60 +0.6
1,415,268 - IAI46_06640 0.60 +1.8
1,415,307 + IAI46_06640 0.69 +0.4
1,415,331 + IAI46_06640 0.74 +0.1
1,415,331 + IAI46_06640 0.74 +0.1
1,415,331 + IAI46_06640 0.74 +0.7
1,415,332 - IAI46_06640 0.75 -1.3
1,415,334 + IAI46_06640 0.75 -0.3
1,415,399 + IAI46_06640 0.90 -0.5
1,415,501 + -0.5
1,415,502 - +0.0
1,415,502 - -0.9
1,415,837 - IAI46_06645 0.38 -0.6

Or see this region's nucleotide sequence