Strain Fitness in Serratia liquefaciens MT49 around IAI46_06390

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06380 and IAI46_06385 are separated by 21 nucleotidesIAI46_06385 and IAI46_06390 are separated by 38 nucleotidesIAI46_06390 and IAI46_06395 overlap by 1 nucleotides IAI46_06380: IAI46_06380 - quinolinate synthase NadA, at 1,359,666 to 1,360,727 _06380 IAI46_06385: IAI46_06385 - nicotinamide riboside transporter PnuC, at 1,360,749 to 1,361,474 _06385 IAI46_06390: IAI46_06390 - CDF family zinc transporter ZitB, at 1,361,513 to 1,362,475 _06390 IAI46_06395: IAI46_06395 - transporter substrate-binding domain-containing protein, at 1,362,475 to 1,365,690 _06395 Position (kb) 1361 1362 1363Strain fitness (log2 ratio) -2 -1 0 1 2at 1360.646 kb on - strandat 1360.711 kb on + strandat 1360.712 kb on - strandat 1360.712 kb on - strandat 1360.737 kb on - strandat 1360.742 kb on + strandat 1360.742 kb on + strandat 1360.743 kb on - strandat 1360.772 kb on + strandat 1360.773 kb on - strandat 1360.773 kb on - strandat 1360.856 kb on + strand, within IAI46_06385at 1360.857 kb on - strand, within IAI46_06385at 1360.857 kb on - strand, within IAI46_06385at 1360.857 kb on - strand, within IAI46_06385at 1360.863 kb on + strand, within IAI46_06385at 1360.907 kb on + strand, within IAI46_06385at 1360.950 kb on + strand, within IAI46_06385at 1360.992 kb on - strand, within IAI46_06385at 1360.995 kb on + strand, within IAI46_06385at 1360.995 kb on + strand, within IAI46_06385at 1360.995 kb on + strand, within IAI46_06385at 1360.996 kb on - strand, within IAI46_06385at 1361.005 kb on - strand, within IAI46_06385at 1361.092 kb on + strand, within IAI46_06385at 1361.093 kb on - strand, within IAI46_06385at 1361.093 kb on - strand, within IAI46_06385at 1361.093 kb on - strand, within IAI46_06385at 1361.093 kb on - strand, within IAI46_06385at 1361.124 kb on - strand, within IAI46_06385at 1361.171 kb on - strand, within IAI46_06385at 1361.290 kb on - strand, within IAI46_06385at 1361.290 kb on - strand, within IAI46_06385at 1361.290 kb on - strand, within IAI46_06385at 1361.330 kb on + strand, within IAI46_06385at 1361.330 kb on + strand, within IAI46_06385at 1361.330 kb on + strand, within IAI46_06385at 1361.330 kb on + strand, within IAI46_06385at 1361.330 kb on + strand, within IAI46_06385at 1361.380 kb on - strand, within IAI46_06385at 1361.380 kb on - strand, within IAI46_06385at 1361.514 kb on + strandat 1361.515 kb on - strandat 1361.600 kb on - strandat 1361.613 kb on + strand, within IAI46_06390at 1361.662 kb on - strand, within IAI46_06390at 1361.777 kb on + strand, within IAI46_06390at 1361.778 kb on - strand, within IAI46_06390at 1361.891 kb on + strand, within IAI46_06390at 1361.906 kb on + strand, within IAI46_06390at 1361.993 kb on + strand, within IAI46_06390at 1361.994 kb on - strand, within IAI46_06390at 1362.005 kb on + strand, within IAI46_06390at 1362.006 kb on - strand, within IAI46_06390at 1362.122 kb on - strand, within IAI46_06390at 1362.170 kb on + strand, within IAI46_06390at 1362.170 kb on + strand, within IAI46_06390at 1362.177 kb on - strand, within IAI46_06390at 1362.177 kb on - strand, within IAI46_06390at 1362.177 kb on - strand, within IAI46_06390at 1362.266 kb on - strand, within IAI46_06390at 1362.325 kb on + strand, within IAI46_06390at 1362.326 kb on - strand, within IAI46_06390at 1362.396 kb on - strandat 1362.408 kb on - strandat 1362.423 kb on - strandat 1362.430 kb on + strandat 1362.434 kb on - strandat 1362.434 kb on - strandat 1362.434 kb on - strandat 1362.437 kb on - strandat 1362.455 kb on + strandat 1362.455 kb on + strandat 1362.455 kb on + strandat 1362.456 kb on - strandat 1362.456 kb on - strandat 1362.456 kb on - strandat 1362.456 kb on - strandat 1362.456 kb on - strandat 1362.476 kb on + strandat 1362.476 kb on + strandat 1362.486 kb on + strandat 1362.487 kb on - strandat 1362.495 kb on + strandat 1362.501 kb on + strandat 1362.501 kb on + strandat 1362.502 kb on - strandat 1362.502 kb on - strandat 1362.502 kb on - strandat 1362.503 kb on + strandat 1362.503 kb on + strandat 1362.503 kb on + strandat 1362.504 kb on - strandat 1362.504 kb on - strandat 1362.504 kb on - strandat 1362.538 kb on + strandat 1362.539 kb on - strandat 1362.561 kb on + strandat 1362.566 kb on - strandat 1362.566 kb on - strandat 1362.566 kb on - strandat 1362.566 kb on - strandat 1362.573 kb on + strandat 1362.574 kb on - strandat 1362.575 kb on + strandat 1362.576 kb on - strandat 1362.701 kb on - strandat 1362.811 kb on - strand, within IAI46_06395at 1362.929 kb on - strand, within IAI46_06395at 1362.951 kb on + strand, within IAI46_06395at 1363.068 kb on + strand, within IAI46_06395at 1363.069 kb on - strand, within IAI46_06395at 1363.073 kb on + strand, within IAI46_06395at 1363.073 kb on + strand, within IAI46_06395at 1363.073 kb on + strand, within IAI46_06395at 1363.074 kb on - strand, within IAI46_06395at 1363.443 kb on - strand, within IAI46_06395

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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1,360,646 - -0.2
1,360,711 + +0.3
1,360,712 - +0.1
1,360,712 - +1.4
1,360,737 - +0.2
1,360,742 + -0.3
1,360,742 + -0.3
1,360,743 - +0.8
1,360,772 + +0.1
1,360,773 - -0.8
1,360,773 - -0.4
1,360,856 + IAI46_06385 0.15 +0.3
1,360,857 - IAI46_06385 0.15 -0.2
1,360,857 - IAI46_06385 0.15 -0.2
1,360,857 - IAI46_06385 0.15 -0.5
1,360,863 + IAI46_06385 0.16 +0.9
1,360,907 + IAI46_06385 0.22 +0.6
1,360,950 + IAI46_06385 0.28 +0.1
1,360,992 - IAI46_06385 0.33 -0.2
1,360,995 + IAI46_06385 0.34 +0.8
1,360,995 + IAI46_06385 0.34 +0.4
1,360,995 + IAI46_06385 0.34 +1.4
1,360,996 - IAI46_06385 0.34 +0.0
1,361,005 - IAI46_06385 0.35 +0.3
1,361,092 + IAI46_06385 0.47 -0.1
1,361,093 - IAI46_06385 0.47 +1.1
1,361,093 - IAI46_06385 0.47 +0.3
1,361,093 - IAI46_06385 0.47 -0.2
1,361,093 - IAI46_06385 0.47 -0.4
1,361,124 - IAI46_06385 0.52 +0.0
1,361,171 - IAI46_06385 0.58 -0.3
1,361,290 - IAI46_06385 0.75 +0.4
1,361,290 - IAI46_06385 0.75 -0.4
1,361,290 - IAI46_06385 0.75 +0.2
1,361,330 + IAI46_06385 0.80 +0.7
1,361,330 + IAI46_06385 0.80 +0.5
1,361,330 + IAI46_06385 0.80 +0.3
1,361,330 + IAI46_06385 0.80 +0.3
1,361,330 + IAI46_06385 0.80 -1.6
1,361,380 - IAI46_06385 0.87 -1.1
1,361,380 - IAI46_06385 0.87 -0.1
1,361,514 + +1.1
1,361,515 - -0.3
1,361,600 - +1.4
1,361,613 + IAI46_06390 0.10 +0.1
1,361,662 - IAI46_06390 0.15 +0.7
1,361,777 + IAI46_06390 0.27 +0.4
1,361,778 - IAI46_06390 0.28 -0.1
1,361,891 + IAI46_06390 0.39 -0.1
1,361,906 + IAI46_06390 0.41 +0.6
1,361,993 + IAI46_06390 0.50 +0.0
1,361,994 - IAI46_06390 0.50 -0.2
1,362,005 + IAI46_06390 0.51 +0.7
1,362,006 - IAI46_06390 0.51 -0.3
1,362,122 - IAI46_06390 0.63 -0.3
1,362,170 + IAI46_06390 0.68 -1.8
1,362,170 + IAI46_06390 0.68 -0.3
1,362,177 - IAI46_06390 0.69 +0.7
1,362,177 - IAI46_06390 0.69 +1.1
1,362,177 - IAI46_06390 0.69 +0.7
1,362,266 - IAI46_06390 0.78 +0.1
1,362,325 + IAI46_06390 0.84 -2.4
1,362,326 - IAI46_06390 0.84 +0.8
1,362,396 - +0.6
1,362,408 - -0.9
1,362,423 - +0.3
1,362,430 + +0.5
1,362,434 - -0.2
1,362,434 - +0.6
1,362,434 - +0.3
1,362,437 - +0.8
1,362,455 + +1.0
1,362,455 + -0.3
1,362,455 + -0.9
1,362,456 - -0.6
1,362,456 - +0.1
1,362,456 - +0.1
1,362,456 - -0.8
1,362,456 - -0.9
1,362,476 + -0.1
1,362,476 + -2.3
1,362,486 + +0.9
1,362,487 - +0.3
1,362,495 + -0.5
1,362,501 + +0.2
1,362,501 + +0.2
1,362,502 - -1.2
1,362,502 - +1.7
1,362,502 - -0.3
1,362,503 + -1.1
1,362,503 + +1.3
1,362,503 + +0.1
1,362,504 - +1.0
1,362,504 - -0.4
1,362,504 - +0.4
1,362,538 + +0.7
1,362,539 - -0.8
1,362,561 + +0.0
1,362,566 - -0.4
1,362,566 - +0.0
1,362,566 - +1.0
1,362,566 - +0.5
1,362,573 + -0.7
1,362,574 - +0.1
1,362,575 + +0.5
1,362,576 - +1.6
1,362,701 - -0.3
1,362,811 - IAI46_06395 0.10 +0.1
1,362,929 - IAI46_06395 0.14 +1.3
1,362,951 + IAI46_06395 0.15 +1.8
1,363,068 + IAI46_06395 0.18 +0.1
1,363,069 - IAI46_06395 0.18 +1.1
1,363,073 + IAI46_06395 0.19 +0.0
1,363,073 + IAI46_06395 0.19 +0.1
1,363,073 + IAI46_06395 0.19 -0.7
1,363,074 - IAI46_06395 0.19 +0.3
1,363,443 - IAI46_06395 0.30 +1.3

Or see this region's nucleotide sequence