Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_05810 and IAI46_05815 are separated by 148 nucleotides IAI46_05815 and IAI46_05820 are separated by 652 nucleotides
IAI46_05810: IAI46_05810 - LysR family transcriptional regulator, at 1,248,707 to 1,249,600
_05810
IAI46_05815: IAI46_05815 - flavodoxin family protein, at 1,249,749 to 1,250,300
_05815
IAI46_05820: IAI46_05820 - diguanylate cyclase, at 1,250,953 to 1,252,413
_05820
Position (kb)
1249
1250
1251 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1248.794 kb on - strand at 1248.794 kb on - strand at 1248.827 kb on - strand, within IAI46_05810 at 1248.976 kb on - strand, within IAI46_05810 at 1248.994 kb on - strand, within IAI46_05810 at 1248.994 kb on - strand, within IAI46_05810 at 1249.028 kb on + strand, within IAI46_05810 at 1249.028 kb on + strand, within IAI46_05810 at 1249.086 kb on + strand, within IAI46_05810 at 1249.087 kb on - strand, within IAI46_05810 at 1249.087 kb on - strand, within IAI46_05810 at 1249.111 kb on + strand, within IAI46_05810 at 1249.140 kb on + strand, within IAI46_05810 at 1249.141 kb on - strand, within IAI46_05810 at 1249.226 kb on + strand, within IAI46_05810 at 1249.245 kb on + strand, within IAI46_05810 at 1249.246 kb on - strand, within IAI46_05810 at 1249.266 kb on + strand, within IAI46_05810 at 1249.284 kb on + strand, within IAI46_05810 at 1249.288 kb on + strand, within IAI46_05810 at 1249.289 kb on - strand, within IAI46_05810 at 1249.411 kb on + strand, within IAI46_05810 at 1249.411 kb on + strand, within IAI46_05810 at 1249.433 kb on + strand, within IAI46_05810 at 1249.434 kb on - strand, within IAI46_05810 at 1249.529 kb on + strand at 1249.529 kb on + strand at 1249.532 kb on + strand at 1249.620 kb on - strand at 1249.685 kb on + strand at 1249.686 kb on - strand at 1249.686 kb on - strand at 1249.716 kb on - strand at 1249.716 kb on - strand at 1249.725 kb on + strand at 1249.726 kb on - strand at 1249.726 kb on - strand at 1249.727 kb on + strand at 1249.728 kb on - strand at 1249.728 kb on - strand at 1249.728 kb on - strand at 1249.747 kb on + strand at 1249.747 kb on + strand at 1249.862 kb on + strand, within IAI46_05815 at 1249.926 kb on + strand, within IAI46_05815 at 1249.926 kb on + strand, within IAI46_05815 at 1249.927 kb on - strand, within IAI46_05815 at 1249.927 kb on - strand, within IAI46_05815 at 1249.927 kb on - strand, within IAI46_05815 at 1249.927 kb on - strand, within IAI46_05815 at 1249.927 kb on - strand, within IAI46_05815 at 1249.928 kb on + strand, within IAI46_05815 at 1249.928 kb on + strand, within IAI46_05815 at 1250.027 kb on + strand, within IAI46_05815 at 1250.136 kb on - strand, within IAI46_05815 at 1250.259 kb on + strand at 1250.298 kb on + strand at 1250.299 kb on - strand at 1250.344 kb on + strand at 1250.353 kb on - strand at 1250.358 kb on + strand at 1250.358 kb on + strand at 1250.408 kb on - strand at 1250.421 kb on - strand at 1250.434 kb on + strand at 1250.434 kb on + strand at 1250.488 kb on + strand at 1250.488 kb on + strand at 1250.488 kb on + strand at 1250.488 kb on + strand at 1250.489 kb on - strand at 1250.489 kb on - strand at 1250.489 kb on - strand at 1250.499 kb on + strand at 1250.499 kb on + strand at 1250.500 kb on - strand at 1250.513 kb on + strand at 1250.552 kb on + strand at 1250.553 kb on - strand at 1250.563 kb on + strand at 1250.564 kb on - strand at 1250.620 kb on + strand at 1250.620 kb on + strand at 1250.621 kb on - strand at 1250.668 kb on + strand at 1250.682 kb on + strand at 1250.683 kb on - strand at 1250.685 kb on + strand at 1250.722 kb on + strand at 1250.723 kb on - strand at 1250.723 kb on - strand at 1250.728 kb on - strand at 1250.735 kb on + strand at 1250.736 kb on - strand at 1250.890 kb on - strand at 1250.890 kb on - strand at 1250.920 kb on + strand at 1250.920 kb on + strand at 1250.921 kb on - strand at 1250.926 kb on + strand at 1250.927 kb on - strand at 1250.945 kb on - strand at 1250.946 kb on + strand at 1250.946 kb on + strand at 1250.946 kb on + strand at 1250.946 kb on + strand at 1250.946 kb on + strand at 1250.950 kb on + strand at 1250.951 kb on - strand at 1250.951 kb on - strand at 1250.978 kb on + strand at 1251.037 kb on + strand at 1251.041 kb on + strand at 1251.074 kb on + strand at 1251.074 kb on + strand at 1251.114 kb on - strand, within IAI46_05820 at 1251.122 kb on + strand, within IAI46_05820 at 1251.123 kb on - strand, within IAI46_05820 at 1251.123 kb on - strand, within IAI46_05820 at 1251.126 kb on - strand, within IAI46_05820 at 1251.126 kb on - strand, within IAI46_05820 at 1251.142 kb on + strand, within IAI46_05820 at 1251.143 kb on - strand, within IAI46_05820 at 1251.172 kb on + strand, within IAI46_05820 at 1251.172 kb on + strand, within IAI46_05820
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic remove 1,248,794 - +0.3 1,248,794 - -0.6 1,248,827 - IAI46_05810 0.13 -1.3 1,248,976 - IAI46_05810 0.30 +0.7 1,248,994 - IAI46_05810 0.32 +0.2 1,248,994 - IAI46_05810 0.32 +0.3 1,249,028 + IAI46_05810 0.36 -0.6 1,249,028 + IAI46_05810 0.36 +0.6 1,249,086 + IAI46_05810 0.42 -0.0 1,249,087 - IAI46_05810 0.43 -0.6 1,249,087 - IAI46_05810 0.43 -0.7 1,249,111 + IAI46_05810 0.45 +0.8 1,249,140 + IAI46_05810 0.48 -0.3 1,249,141 - IAI46_05810 0.49 -0.3 1,249,226 + IAI46_05810 0.58 -0.4 1,249,245 + IAI46_05810 0.60 +0.0 1,249,246 - IAI46_05810 0.60 -1.0 1,249,266 + IAI46_05810 0.63 +0.2 1,249,284 + IAI46_05810 0.65 +0.7 1,249,288 + IAI46_05810 0.65 -0.4 1,249,289 - IAI46_05810 0.65 +0.1 1,249,411 + IAI46_05810 0.79 -1.4 1,249,411 + IAI46_05810 0.79 +0.2 1,249,433 + IAI46_05810 0.81 -2.0 1,249,434 - IAI46_05810 0.81 +0.3 1,249,529 + +0.4 1,249,529 + -0.2 1,249,532 + +0.8 1,249,620 - +0.2 1,249,685 + -0.8 1,249,686 - +1.0 1,249,686 - -0.9 1,249,716 - -0.3 1,249,716 - -0.6 1,249,725 + -0.3 1,249,726 - +1.5 1,249,726 - -0.1 1,249,727 + +0.2 1,249,728 - +0.1 1,249,728 - +0.7 1,249,728 - +0.2 1,249,747 + -0.7 1,249,747 + -0.6 1,249,862 + IAI46_05815 0.20 +1.6 1,249,926 + IAI46_05815 0.32 +0.2 1,249,926 + IAI46_05815 0.32 -1.1 1,249,927 - IAI46_05815 0.32 -0.8 1,249,927 - IAI46_05815 0.32 -1.8 1,249,927 - IAI46_05815 0.32 +1.2 1,249,927 - IAI46_05815 0.32 +0.0 1,249,927 - IAI46_05815 0.32 +0.8 1,249,928 + IAI46_05815 0.32 -0.7 1,249,928 + IAI46_05815 0.32 -0.8 1,250,027 + IAI46_05815 0.50 -0.2 1,250,136 - IAI46_05815 0.70 +0.5 1,250,259 + +1.0 1,250,298 + +0.1 1,250,299 - +0.0 1,250,344 + -0.5 1,250,353 - +0.6 1,250,358 + -0.4 1,250,358 + +0.7 1,250,408 - -1.6 1,250,421 - +0.4 1,250,434 + -0.8 1,250,434 + -0.3 1,250,488 + +0.5 1,250,488 + -0.2 1,250,488 + +0.7 1,250,488 + +0.4 1,250,489 - -0.0 1,250,489 - -1.0 1,250,489 - +0.2 1,250,499 + -0.8 1,250,499 + -0.2 1,250,500 - +0.0 1,250,513 + -0.1 1,250,552 + -1.3 1,250,553 - +0.8 1,250,563 + -0.2 1,250,564 - -0.0 1,250,620 + +0.7 1,250,620 + +0.1 1,250,621 - -0.3 1,250,668 + -0.1 1,250,682 + -0.3 1,250,683 - -0.0 1,250,685 + +0.3 1,250,722 + +0.0 1,250,723 - +0.5 1,250,723 - -0.9 1,250,728 - +0.3 1,250,735 + +2.4 1,250,736 - -0.2 1,250,890 - -0.4 1,250,890 - +0.3 1,250,920 + +1.0 1,250,920 + +0.3 1,250,921 - +0.9 1,250,926 + +0.5 1,250,927 - +0.6 1,250,945 - +0.2 1,250,946 + -0.7 1,250,946 + -0.1 1,250,946 + +1.2 1,250,946 + +0.2 1,250,946 + -0.0 1,250,950 + +0.4 1,250,951 - -0.1 1,250,951 - -0.3 1,250,978 + -0.7 1,251,037 + -0.4 1,251,041 + +0.1 1,251,074 + +0.2 1,251,074 + -0.0 1,251,114 - IAI46_05820 0.11 -0.1 1,251,122 + IAI46_05820 0.12 -0.2 1,251,123 - IAI46_05820 0.12 +0.5 1,251,123 - IAI46_05820 0.12 -0.8 1,251,126 - IAI46_05820 0.12 +0.7 1,251,126 - IAI46_05820 0.12 +0.1 1,251,142 + IAI46_05820 0.13 -1.1 1,251,143 - IAI46_05820 0.13 -1.3 1,251,172 + IAI46_05820 0.15 -0.6 1,251,172 + IAI46_05820 0.15 +0.0
Or see this region's nucleotide sequence