Strain Fitness in Serratia liquefaciens MT49 around IAI46_05620

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_05610 and IAI46_05615 are separated by 487 nucleotidesIAI46_05615 and IAI46_05620 are separated by 2 nucleotides IAI46_05610: IAI46_05610 - hypothetical protein, at 1,209,467 to 1,210,948 _05610 IAI46_05615: IAI46_05615 - hypothetical protein, at 1,211,436 to 1,211,822 _05615 IAI46_05620: IAI46_05620 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 1,211,825 to 1,213,123 _05620 Position (kb) 1211 1212 1213 1214Strain fitness (log2 ratio) -2 -1 0 1 2at 1210.850 kb on - strandat 1210.853 kb on - strandat 1210.858 kb on + strandat 1211.156 kb on - strandat 1211.165 kb on + strandat 1211.188 kb on + strandat 1211.338 kb on + strandat 1211.347 kb on - strandat 1211.513 kb on + strand, within IAI46_05615at 1211.513 kb on + strand, within IAI46_05615at 1211.550 kb on - strand, within IAI46_05615at 1211.602 kb on + strand, within IAI46_05615at 1211.660 kb on + strand, within IAI46_05615at 1211.685 kb on + strand, within IAI46_05615at 1211.742 kb on + strand, within IAI46_05615at 1211.743 kb on - strand, within IAI46_05615at 1211.820 kb on + strandat 1211.836 kb on - strandat 1211.850 kb on + strandat 1211.851 kb on - strandat 1211.854 kb on + strandat 1211.917 kb on + strandat 1211.973 kb on + strand, within IAI46_05620at 1211.974 kb on - strand, within IAI46_05620at 1211.974 kb on - strand, within IAI46_05620at 1212.133 kb on + strand, within IAI46_05620at 1212.139 kb on + strand, within IAI46_05620at 1212.185 kb on - strand, within IAI46_05620at 1212.185 kb on - strand, within IAI46_05620at 1212.191 kb on - strand, within IAI46_05620at 1212.204 kb on + strand, within IAI46_05620at 1212.204 kb on + strand, within IAI46_05620at 1212.204 kb on + strand, within IAI46_05620at 1212.205 kb on - strand, within IAI46_05620at 1212.216 kb on + strand, within IAI46_05620at 1212.380 kb on + strand, within IAI46_05620at 1212.492 kb on + strand, within IAI46_05620at 1212.587 kb on - strand, within IAI46_05620at 1212.641 kb on + strand, within IAI46_05620at 1212.643 kb on + strand, within IAI46_05620at 1212.753 kb on + strand, within IAI46_05620at 1212.784 kb on - strand, within IAI46_05620at 1212.812 kb on - strand, within IAI46_05620at 1212.864 kb on + strand, within IAI46_05620at 1212.864 kb on + strand, within IAI46_05620at 1212.869 kb on - strand, within IAI46_05620at 1212.925 kb on + strand, within IAI46_05620at 1212.926 kb on - strand, within IAI46_05620at 1212.928 kb on - strand, within IAI46_05620at 1213.003 kb on + strandat 1213.003 kb on + strandat 1213.004 kb on - strandat 1213.004 kb on - strandat 1213.029 kb on - strandat 1213.029 kb on - strandat 1213.055 kb on - strandat 1213.055 kb on - strandat 1213.056 kb on + strandat 1213.057 kb on - strandat 1213.072 kb on + strandat 1213.166 kb on + strandat 1213.219 kb on + strandat 1213.278 kb on - strandat 1213.287 kb on + strandat 1213.289 kb on + strandat 1213.302 kb on + strandat 1213.308 kb on - strandat 1213.321 kb on + strandat 1213.365 kb on - strandat 1213.369 kb on + strandat 1213.370 kb on - strandat 1213.373 kb on - strandat 1213.425 kb on + strandat 1213.425 kb on + strandat 1213.426 kb on - strandat 1213.426 kb on - strandat 1213.427 kb on + strandat 1213.428 kb on - strandat 1213.583 kb on + strandat 1213.584 kb on - strandat 1213.584 kb on - strandat 1213.599 kb on + strandat 1213.630 kb on + strandat 1213.660 kb on + strandat 1213.668 kb on - strandat 1213.689 kb on - strandat 1213.723 kb on - strandat 1213.724 kb on + strandat 1213.868 kb on - strandat 1213.943 kb on + strandat 1214.053 kb on - strandat 1214.057 kb on + strandat 1214.058 kb on - strandat 1214.071 kb on - strandat 1214.071 kb on - strandat 1214.088 kb on + strandat 1214.089 kb on - strandat 1214.089 kb on - strandat 1214.089 kb on - strandat 1214.092 kb on + strandat 1214.092 kb on + strandat 1214.093 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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1,210,850 - +0.3
1,210,853 - -0.4
1,210,858 + -1.4
1,211,156 - +0.8
1,211,165 + -0.5
1,211,188 + +0.2
1,211,338 + +0.4
1,211,347 - -1.2
1,211,513 + IAI46_05615 0.20 +0.5
1,211,513 + IAI46_05615 0.20 +0.7
1,211,550 - IAI46_05615 0.29 +0.3
1,211,602 + IAI46_05615 0.43 +0.4
1,211,660 + IAI46_05615 0.58 -0.1
1,211,685 + IAI46_05615 0.64 -1.0
1,211,742 + IAI46_05615 0.79 -0.6
1,211,743 - IAI46_05615 0.79 +0.8
1,211,820 + +0.6
1,211,836 - -0.6
1,211,850 + -1.4
1,211,851 - -0.6
1,211,854 + +1.0
1,211,917 + -0.1
1,211,973 + IAI46_05620 0.11 +0.0
1,211,974 - IAI46_05620 0.11 -0.7
1,211,974 - IAI46_05620 0.11 -0.8
1,212,133 + IAI46_05620 0.24 +0.3
1,212,139 + IAI46_05620 0.24 -0.4
1,212,185 - IAI46_05620 0.28 -0.5
1,212,185 - IAI46_05620 0.28 -0.3
1,212,191 - IAI46_05620 0.28 +0.5
1,212,204 + IAI46_05620 0.29 +0.3
1,212,204 + IAI46_05620 0.29 +0.4
1,212,204 + IAI46_05620 0.29 +0.7
1,212,205 - IAI46_05620 0.29 -1.2
1,212,216 + IAI46_05620 0.30 +0.8
1,212,380 + IAI46_05620 0.43 -0.4
1,212,492 + IAI46_05620 0.51 -1.8
1,212,587 - IAI46_05620 0.59 -0.7
1,212,641 + IAI46_05620 0.63 +1.2
1,212,643 + IAI46_05620 0.63 -0.5
1,212,753 + IAI46_05620 0.71 +0.8
1,212,784 - IAI46_05620 0.74 +0.8
1,212,812 - IAI46_05620 0.76 -0.5
1,212,864 + IAI46_05620 0.80 +0.2
1,212,864 + IAI46_05620 0.80 +0.2
1,212,869 - IAI46_05620 0.80 +0.7
1,212,925 + IAI46_05620 0.85 +0.7
1,212,926 - IAI46_05620 0.85 -0.8
1,212,928 - IAI46_05620 0.85 +0.1
1,213,003 + +0.1
1,213,003 + -0.5
1,213,004 - -0.0
1,213,004 - +0.5
1,213,029 - -0.2
1,213,029 - -1.9
1,213,055 - -0.0
1,213,055 - +0.0
1,213,056 + -0.1
1,213,057 - +0.8
1,213,072 + -0.1
1,213,166 + -0.1
1,213,219 + +2.1
1,213,278 - -0.4
1,213,287 + +0.1
1,213,289 + +1.0
1,213,302 + +0.8
1,213,308 - -0.2
1,213,321 + +0.3
1,213,365 - -0.9
1,213,369 + +0.5
1,213,370 - -0.6
1,213,373 - -0.7
1,213,425 + +0.4
1,213,425 + +0.1
1,213,426 - -1.6
1,213,426 - +0.2
1,213,427 + -0.6
1,213,428 - +1.8
1,213,583 + +0.9
1,213,584 - -0.8
1,213,584 - -1.1
1,213,599 + +0.2
1,213,630 + +0.3
1,213,660 + +1.0
1,213,668 - -0.9
1,213,689 - -0.7
1,213,723 - +0.7
1,213,724 + -2.5
1,213,868 - -0.8
1,213,943 + -1.1
1,214,053 - -0.9
1,214,057 + -0.7
1,214,058 - +0.9
1,214,071 - +0.7
1,214,071 - +0.7
1,214,088 + -0.1
1,214,089 - +0.4
1,214,089 - +0.5
1,214,089 - +1.1
1,214,092 + -0.1
1,214,092 + +1.2
1,214,093 - +1.5

Or see this region's nucleotide sequence