Strain Fitness in Serratia liquefaciens MT49 around IAI46_04760

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04755 and IAI46_04760 are separated by 256 nucleotidesIAI46_04760 and IAI46_04765 are separated by 195 nucleotides IAI46_04755: IAI46_04755 - fructokinase, at 1,019,022 to 1,019,930 _04755 IAI46_04760: IAI46_04760 - PRD domain-containing protein, at 1,020,187 to 1,021,029 _04760 IAI46_04765: IAI46_04765 - exonuclease subunit SbcC, at 1,021,225 to 1,024,476 _04765 Position (kb) 1020 1021 1022Strain fitness (log2 ratio) -1 0 1 2at 1019.233 kb on - strand, within IAI46_04755at 1019.233 kb on - strand, within IAI46_04755at 1019.233 kb on - strand, within IAI46_04755at 1019.233 kb on - strand, within IAI46_04755at 1019.233 kb on - strand, within IAI46_04755at 1019.408 kb on + strand, within IAI46_04755at 1019.409 kb on - strand, within IAI46_04755at 1019.550 kb on + strand, within IAI46_04755at 1019.550 kb on + strand, within IAI46_04755at 1019.550 kb on + strand, within IAI46_04755at 1019.550 kb on + strand, within IAI46_04755at 1019.551 kb on - strand, within IAI46_04755at 1019.551 kb on - strand, within IAI46_04755at 1019.551 kb on - strand, within IAI46_04755at 1019.571 kb on - strand, within IAI46_04755at 1019.582 kb on + strand, within IAI46_04755at 1019.582 kb on + strand, within IAI46_04755at 1019.744 kb on + strand, within IAI46_04755at 1019.745 kb on - strand, within IAI46_04755at 1019.780 kb on + strand, within IAI46_04755at 1019.803 kb on - strand, within IAI46_04755at 1019.897 kb on - strandat 1019.964 kb on + strandat 1019.964 kb on + strandat 1019.964 kb on + strandat 1019.979 kb on - strandat 1020.006 kb on - strandat 1020.006 kb on - strandat 1020.006 kb on - strandat 1020.009 kb on + strandat 1020.009 kb on + strandat 1020.010 kb on - strandat 1020.010 kb on - strandat 1020.014 kb on + strandat 1020.014 kb on + strandat 1020.014 kb on + strandat 1020.188 kb on + strandat 1020.188 kb on + strandat 1020.188 kb on + strandat 1020.188 kb on + strandat 1020.188 kb on + strandat 1020.188 kb on + strandat 1020.189 kb on - strandat 1020.344 kb on + strand, within IAI46_04760at 1020.428 kb on + strand, within IAI46_04760at 1020.428 kb on + strand, within IAI46_04760at 1020.429 kb on - strand, within IAI46_04760at 1020.429 kb on - strand, within IAI46_04760at 1020.429 kb on - strand, within IAI46_04760at 1020.429 kb on - strand, within IAI46_04760at 1020.429 kb on - strand, within IAI46_04760at 1020.429 kb on - strand, within IAI46_04760at 1020.429 kb on - strand, within IAI46_04760at 1020.478 kb on - strand, within IAI46_04760at 1020.507 kb on + strand, within IAI46_04760at 1020.507 kb on + strand, within IAI46_04760at 1020.507 kb on + strand, within IAI46_04760at 1020.508 kb on - strand, within IAI46_04760at 1020.508 kb on - strand, within IAI46_04760at 1020.748 kb on - strand, within IAI46_04760at 1020.748 kb on - strand, within IAI46_04760at 1020.749 kb on + strand, within IAI46_04760at 1020.750 kb on - strand, within IAI46_04760at 1020.750 kb on - strand, within IAI46_04760at 1020.759 kb on + strand, within IAI46_04760at 1020.759 kb on + strand, within IAI46_04760at 1020.759 kb on + strand, within IAI46_04760at 1020.760 kb on - strand, within IAI46_04760at 1020.760 kb on - strand, within IAI46_04760at 1020.852 kb on + strand, within IAI46_04760at 1021.005 kb on + strandat 1021.008 kb on + strandat 1021.009 kb on - strandat 1021.025 kb on + strandat 1021.112 kb on - strandat 1021.112 kb on - strandat 1021.114 kb on - strandat 1021.118 kb on - strandat 1021.122 kb on + strandat 1021.122 kb on + strandat 1021.123 kb on - strandat 1021.140 kb on + strandat 1021.141 kb on - strandat 1021.148 kb on + strandat 1021.148 kb on + strandat 1021.149 kb on - strandat 1021.149 kb on - strandat 1021.226 kb on + strandat 1021.227 kb on - strandat 1021.227 kb on - strandat 1021.227 kb on - strandat 1021.287 kb on + strandat 1021.287 kb on + strandat 1021.411 kb on - strandat 1021.537 kb on + strandat 1021.646 kb on + strand, within IAI46_04765at 1021.646 kb on + strand, within IAI46_04765at 1021.683 kb on + strand, within IAI46_04765at 1021.692 kb on + strand, within IAI46_04765at 1021.727 kb on + strand, within IAI46_04765at 1021.743 kb on - strand, within IAI46_04765

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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1,019,233 - IAI46_04755 0.23 +0.3
1,019,233 - IAI46_04755 0.23 +0.5
1,019,233 - IAI46_04755 0.23 +0.8
1,019,233 - IAI46_04755 0.23 +0.5
1,019,233 - IAI46_04755 0.23 +1.0
1,019,408 + IAI46_04755 0.42 -0.7
1,019,409 - IAI46_04755 0.43 +0.4
1,019,550 + IAI46_04755 0.58 -0.2
1,019,550 + IAI46_04755 0.58 -0.3
1,019,550 + IAI46_04755 0.58 +0.6
1,019,550 + IAI46_04755 0.58 +0.7
1,019,551 - IAI46_04755 0.58 +0.4
1,019,551 - IAI46_04755 0.58 -1.0
1,019,551 - IAI46_04755 0.58 +0.1
1,019,571 - IAI46_04755 0.60 +0.1
1,019,582 + IAI46_04755 0.62 +0.1
1,019,582 + IAI46_04755 0.62 -0.1
1,019,744 + IAI46_04755 0.79 +1.9
1,019,745 - IAI46_04755 0.80 +0.2
1,019,780 + IAI46_04755 0.83 +0.5
1,019,803 - IAI46_04755 0.86 -0.1
1,019,897 - -0.8
1,019,964 + -0.5
1,019,964 + -0.5
1,019,964 + -0.4
1,019,979 - +0.2
1,020,006 - +0.3
1,020,006 - -0.2
1,020,006 - +0.0
1,020,009 + +0.4
1,020,009 + +0.0
1,020,010 - +1.1
1,020,010 - +0.5
1,020,014 + +1.0
1,020,014 + -0.1
1,020,014 + -0.5
1,020,188 + +0.0
1,020,188 + -0.6
1,020,188 + +0.8
1,020,188 + -0.4
1,020,188 + -0.2
1,020,188 + -0.3
1,020,189 - +0.4
1,020,344 + IAI46_04760 0.19 -1.0
1,020,428 + IAI46_04760 0.29 +0.9
1,020,428 + IAI46_04760 0.29 +0.1
1,020,429 - IAI46_04760 0.29 -0.2
1,020,429 - IAI46_04760 0.29 -0.0
1,020,429 - IAI46_04760 0.29 +1.7
1,020,429 - IAI46_04760 0.29 -0.0
1,020,429 - IAI46_04760 0.29 -0.2
1,020,429 - IAI46_04760 0.29 +0.1
1,020,429 - IAI46_04760 0.29 -0.9
1,020,478 - IAI46_04760 0.35 +0.5
1,020,507 + IAI46_04760 0.38 +0.1
1,020,507 + IAI46_04760 0.38 +0.5
1,020,507 + IAI46_04760 0.38 +0.3
1,020,508 - IAI46_04760 0.38 -0.8
1,020,508 - IAI46_04760 0.38 +0.3
1,020,748 - IAI46_04760 0.67 -0.2
1,020,748 - IAI46_04760 0.67 -0.4
1,020,749 + IAI46_04760 0.67 -0.1
1,020,750 - IAI46_04760 0.67 -1.3
1,020,750 - IAI46_04760 0.67 +0.4
1,020,759 + IAI46_04760 0.68 +0.2
1,020,759 + IAI46_04760 0.68 -1.0
1,020,759 + IAI46_04760 0.68 -0.0
1,020,760 - IAI46_04760 0.68 -0.2
1,020,760 - IAI46_04760 0.68 +1.3
1,020,852 + IAI46_04760 0.79 +0.4
1,021,005 + +0.7
1,021,008 + -0.3
1,021,009 - -0.0
1,021,025 + +1.7
1,021,112 - -0.2
1,021,112 - +0.2
1,021,114 - -0.2
1,021,118 - +0.3
1,021,122 + -0.4
1,021,122 + +0.5
1,021,123 - +0.5
1,021,140 + +0.5
1,021,141 - +0.1
1,021,148 + +0.5
1,021,148 + +0.2
1,021,149 - -0.0
1,021,149 - +0.1
1,021,226 + +0.2
1,021,227 - +0.3
1,021,227 - +0.6
1,021,227 - +0.5
1,021,287 + +0.7
1,021,287 + -0.8
1,021,411 - +1.0
1,021,537 + -0.5
1,021,646 + IAI46_04765 0.13 -1.2
1,021,646 + IAI46_04765 0.13 +0.1
1,021,683 + IAI46_04765 0.14 +0.2
1,021,692 + IAI46_04765 0.14 +0.7
1,021,727 + IAI46_04765 0.15 -0.8
1,021,743 - IAI46_04765 0.16 +0.2

Or see this region's nucleotide sequence