Strain Fitness in Serratia liquefaciens MT49 around IAI46_04745

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04735 and IAI46_04740 are separated by 11 nucleotidesIAI46_04740 and IAI46_04745 overlap by 1 nucleotidesIAI46_04745 and IAI46_04750 overlap by 26 nucleotidesIAI46_04750 and IAI46_04755 are separated by 211 nucleotides IAI46_04735: IAI46_04735 - D-lyxose/D-mannose family sugar isomerase, at 1,015,524 to 1,016,210 _04735 IAI46_04740: IAI46_04740 - ketose 1,6-bisphosphate aldolase, at 1,016,222 to 1,017,082 _04740 IAI46_04745: IAI46_04745 - carbohydrate kinase family protein, at 1,017,082 to 1,018,095 _04745 IAI46_04750: IAI46_04750 - response regulator transcription factor, at 1,018,070 to 1,018,810 _04750 IAI46_04755: IAI46_04755 - fructokinase, at 1,019,022 to 1,019,930 _04755 Position (kb) 1017 1018 1019Strain fitness (log2 ratio) -1 0 1at 1016.141 kb on + strand, within IAI46_04735at 1016.183 kb on + strandat 1016.190 kb on + strandat 1016.201 kb on + strandat 1016.209 kb on - strandat 1016.273 kb on + strandat 1016.366 kb on - strand, within IAI46_04740at 1016.387 kb on + strand, within IAI46_04740at 1016.549 kb on + strand, within IAI46_04740at 1016.550 kb on - strand, within IAI46_04740at 1016.660 kb on + strand, within IAI46_04740at 1016.661 kb on - strand, within IAI46_04740at 1016.661 kb on - strand, within IAI46_04740at 1016.680 kb on + strand, within IAI46_04740at 1016.680 kb on + strand, within IAI46_04740at 1016.771 kb on + strand, within IAI46_04740at 1016.772 kb on - strand, within IAI46_04740at 1016.785 kb on + strand, within IAI46_04740at 1016.785 kb on + strand, within IAI46_04740at 1016.785 kb on + strand, within IAI46_04740at 1016.785 kb on + strand, within IAI46_04740at 1016.918 kb on + strand, within IAI46_04740at 1016.918 kb on + strand, within IAI46_04740at 1016.918 kb on + strand, within IAI46_04740at 1016.918 kb on + strand, within IAI46_04740at 1017.213 kb on + strand, within IAI46_04745at 1017.213 kb on + strand, within IAI46_04745at 1017.214 kb on - strand, within IAI46_04745at 1017.301 kb on - strand, within IAI46_04745at 1017.499 kb on + strand, within IAI46_04745at 1018.029 kb on + strandat 1018.201 kb on + strand, within IAI46_04750at 1018.266 kb on - strand, within IAI46_04750at 1018.283 kb on + strand, within IAI46_04750at 1018.306 kb on - strand, within IAI46_04750at 1018.509 kb on + strand, within IAI46_04750at 1018.510 kb on - strand, within IAI46_04750at 1018.510 kb on - strand, within IAI46_04750at 1018.613 kb on + strand, within IAI46_04750at 1018.613 kb on + strand, within IAI46_04750at 1018.614 kb on - strand, within IAI46_04750at 1018.724 kb on + strand, within IAI46_04750at 1018.724 kb on + strand, within IAI46_04750at 1018.725 kb on - strand, within IAI46_04750at 1018.725 kb on - strand, within IAI46_04750at 1018.725 kb on - strand, within IAI46_04750at 1018.796 kb on + strandat 1018.796 kb on + strandat 1018.828 kb on + strandat 1018.846 kb on + strandat 1018.852 kb on + strandat 1018.852 kb on + strandat 1018.977 kb on + strandat 1018.977 kb on + strandat 1018.977 kb on + strandat 1018.978 kb on - strandat 1018.983 kb on - strandat 1018.983 kb on - strandat 1018.989 kb on + strandat 1018.990 kb on - strandat 1018.990 kb on - strandat 1018.990 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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1,016,141 + IAI46_04735 0.90 +0.4
1,016,183 + -0.1
1,016,190 + -0.5
1,016,201 + +0.1
1,016,209 - +0.6
1,016,273 + -0.2
1,016,366 - IAI46_04740 0.17 -0.1
1,016,387 + IAI46_04740 0.19 +0.3
1,016,549 + IAI46_04740 0.38 +0.2
1,016,550 - IAI46_04740 0.38 +1.1
1,016,660 + IAI46_04740 0.51 +1.1
1,016,661 - IAI46_04740 0.51 +0.4
1,016,661 - IAI46_04740 0.51 -0.4
1,016,680 + IAI46_04740 0.53 -0.3
1,016,680 + IAI46_04740 0.53 -1.0
1,016,771 + IAI46_04740 0.64 +1.0
1,016,772 - IAI46_04740 0.64 -1.4
1,016,785 + IAI46_04740 0.65 +0.4
1,016,785 + IAI46_04740 0.65 -0.4
1,016,785 + IAI46_04740 0.65 +0.5
1,016,785 + IAI46_04740 0.65 +1.2
1,016,918 + IAI46_04740 0.81 +0.6
1,016,918 + IAI46_04740 0.81 -1.2
1,016,918 + IAI46_04740 0.81 +0.4
1,016,918 + IAI46_04740 0.81 -0.6
1,017,213 + IAI46_04745 0.13 +0.1
1,017,213 + IAI46_04745 0.13 -0.8
1,017,214 - IAI46_04745 0.13 +0.1
1,017,301 - IAI46_04745 0.22 +0.2
1,017,499 + IAI46_04745 0.41 -0.7
1,018,029 + +0.5
1,018,201 + IAI46_04750 0.18 +1.4
1,018,266 - IAI46_04750 0.26 +1.0
1,018,283 + IAI46_04750 0.29 +0.5
1,018,306 - IAI46_04750 0.32 +0.5
1,018,509 + IAI46_04750 0.59 +0.4
1,018,510 - IAI46_04750 0.59 -0.1
1,018,510 - IAI46_04750 0.59 -0.6
1,018,613 + IAI46_04750 0.73 +0.5
1,018,613 + IAI46_04750 0.73 +0.5
1,018,614 - IAI46_04750 0.73 -0.3
1,018,724 + IAI46_04750 0.88 -1.7
1,018,724 + IAI46_04750 0.88 +0.2
1,018,725 - IAI46_04750 0.88 +0.5
1,018,725 - IAI46_04750 0.88 +0.4
1,018,725 - IAI46_04750 0.88 +0.3
1,018,796 + -0.4
1,018,796 + -0.1
1,018,828 + +0.6
1,018,846 + +0.2
1,018,852 + -0.8
1,018,852 + +0.8
1,018,977 + +0.8
1,018,977 + +0.8
1,018,977 + -0.0
1,018,978 - -0.2
1,018,983 - +0.2
1,018,983 - -0.1
1,018,989 + +1.0
1,018,990 - +0.1
1,018,990 - +1.1
1,018,990 - +0.3

Or see this region's nucleotide sequence