Strain Fitness in Serratia liquefaciens MT49 around IAI46_04630

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_04620 and IAI46_04625 are separated by 307 nucleotidesIAI46_04625 and IAI46_04630 are separated by 239 nucleotidesIAI46_04630 and IAI46_04635 overlap by 4 nucleotidesIAI46_04635 and IAI46_04640 are separated by 216 nucleotides IAI46_04620: IAI46_04620 - low temperature requirement protein A, at 991,514 to 992,689 _04620 IAI46_04625: IAI46_04625 - DUF1471 domain-containing protein, at 992,997 to 993,281 _04625 IAI46_04630: IAI46_04630 - methyltransferase, at 993,521 to 994,078 _04630 IAI46_04635: IAI46_04635 - GNAT family N-acetyltransferase, at 994,075 to 994,539 _04635 IAI46_04640: IAI46_04640 - ABC transporter substrate-binding protein, at 994,756 to 995,871 _04640 Position (kb) 993 994 995Strain fitness (log2 ratio) -2 -1 0 1at 992.531 kb on + strand, within IAI46_04620at 992.531 kb on + strand, within IAI46_04620at 992.531 kb on + strand, within IAI46_04620at 992.532 kb on - strand, within IAI46_04620at 992.532 kb on - strand, within IAI46_04620at 992.689 kb on + strandat 992.689 kb on + strandat 992.689 kb on + strandat 992.711 kb on - strandat 992.729 kb on - strandat 992.729 kb on - strandat 992.729 kb on - strandat 992.821 kb on + strandat 992.833 kb on - strandat 992.835 kb on - strandat 992.861 kb on + strandat 992.871 kb on + strandat 992.911 kb on - strandat 992.911 kb on - strandat 992.920 kb on + strandat 992.947 kb on - strandat 992.947 kb on - strandat 992.950 kb on + strandat 992.950 kb on + strandat 992.972 kb on + strandat 992.997 kb on - strandat 993.089 kb on + strand, within IAI46_04625at 993.124 kb on + strand, within IAI46_04625at 993.124 kb on + strand, within IAI46_04625at 993.124 kb on + strand, within IAI46_04625at 993.216 kb on - strand, within IAI46_04625at 993.218 kb on + strand, within IAI46_04625at 993.271 kb on + strandat 993.271 kb on + strandat 993.271 kb on + strandat 993.272 kb on - strandat 993.272 kb on - strandat 993.272 kb on - strandat 993.293 kb on - strandat 993.296 kb on + strandat 993.312 kb on + strandat 993.312 kb on + strandat 993.313 kb on - strandat 993.377 kb on + strandat 993.428 kb on - strandat 993.431 kb on - strandat 993.474 kb on - strandat 993.499 kb on + strandat 993.500 kb on - strandat 993.500 kb on - strandat 993.508 kb on + strandat 993.509 kb on - strandat 993.509 kb on - strandat 993.509 kb on - strandat 993.526 kb on - strandat 993.627 kb on + strand, within IAI46_04630at 993.627 kb on + strand, within IAI46_04630at 993.628 kb on - strand, within IAI46_04630at 993.628 kb on - strand, within IAI46_04630at 993.717 kb on + strand, within IAI46_04630at 993.720 kb on + strand, within IAI46_04630at 993.910 kb on + strand, within IAI46_04630at 993.971 kb on + strand, within IAI46_04630at 993.972 kb on - strand, within IAI46_04630at 994.004 kb on + strand, within IAI46_04630at 994.058 kb on + strandat 994.115 kb on + strandat 994.116 kb on - strandat 994.158 kb on - strand, within IAI46_04635at 994.158 kb on - strand, within IAI46_04635at 994.158 kb on - strand, within IAI46_04635at 994.173 kb on + strand, within IAI46_04635at 994.193 kb on - strand, within IAI46_04635at 994.282 kb on + strand, within IAI46_04635at 994.282 kb on + strand, within IAI46_04635at 994.283 kb on - strand, within IAI46_04635at 994.389 kb on - strand, within IAI46_04635at 994.389 kb on - strand, within IAI46_04635at 994.524 kb on + strandat 994.525 kb on - strandat 994.525 kb on - strandat 994.525 kb on - strandat 994.527 kb on + strandat 994.527 kb on + strandat 994.545 kb on + strandat 994.557 kb on + strandat 994.609 kb on + strandat 994.611 kb on + strandat 994.623 kb on + strandat 994.640 kb on + strandat 994.641 kb on - strandat 994.752 kb on - strandat 994.775 kb on + strandat 994.776 kb on - strandat 994.903 kb on + strand, within IAI46_04640at 994.903 kb on + strand, within IAI46_04640at 994.903 kb on + strand, within IAI46_04640at 994.903 kb on + strand, within IAI46_04640at 994.904 kb on - strand, within IAI46_04640at 994.904 kb on - strand, within IAI46_04640at 994.904 kb on - strand, within IAI46_04640at 994.904 kb on - strand, within IAI46_04640at 994.904 kb on - strand, within IAI46_04640at 994.904 kb on - strand, within IAI46_04640at 994.944 kb on + strand, within IAI46_04640at 994.944 kb on + strand, within IAI46_04640at 994.945 kb on - strand, within IAI46_04640at 994.945 kb on - strand, within IAI46_04640at 994.999 kb on + strand, within IAI46_04640at 994.999 kb on + strand, within IAI46_04640at 995.000 kb on - strand, within IAI46_04640at 995.001 kb on + strand, within IAI46_04640at 995.002 kb on - strand, within IAI46_04640at 995.030 kb on + strand, within IAI46_04640at 995.037 kb on + strand, within IAI46_04640at 995.038 kb on - strand, within IAI46_04640

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
remove
992,531 + IAI46_04620 0.86 +0.9
992,531 + IAI46_04620 0.86 +0.6
992,531 + IAI46_04620 0.86 -0.7
992,532 - IAI46_04620 0.87 -0.3
992,532 - IAI46_04620 0.87 +1.0
992,689 + +0.8
992,689 + +0.6
992,689 + -1.1
992,711 - -0.7
992,729 - -0.6
992,729 - +0.1
992,729 - +1.5
992,821 + -0.4
992,833 - -0.1
992,835 - +0.9
992,861 + +0.2
992,871 + -0.2
992,911 - -0.7
992,911 - -0.5
992,920 + +0.8
992,947 - -0.7
992,947 - +0.5
992,950 + +1.3
992,950 + +0.2
992,972 + -0.2
992,997 - -1.8
993,089 + IAI46_04625 0.32 +0.8
993,124 + IAI46_04625 0.45 -1.2
993,124 + IAI46_04625 0.45 +0.4
993,124 + IAI46_04625 0.45 -0.0
993,216 - IAI46_04625 0.77 +0.5
993,218 + IAI46_04625 0.78 -1.9
993,271 + -1.4
993,271 + -0.3
993,271 + +1.1
993,272 - +0.3
993,272 - +0.6
993,272 - -0.6
993,293 - +0.3
993,296 + +0.3
993,312 + +0.7
993,312 + +0.4
993,313 - +1.0
993,377 + +0.5
993,428 - +0.6
993,431 - -1.8
993,474 - +0.7
993,499 + +0.0
993,500 - +0.4
993,500 - -0.2
993,508 + -0.9
993,509 - -1.5
993,509 - -0.7
993,509 - -0.3
993,526 - +0.7
993,627 + IAI46_04630 0.19 +0.6
993,627 + IAI46_04630 0.19 -0.3
993,628 - IAI46_04630 0.19 -0.3
993,628 - IAI46_04630 0.19 +1.3
993,717 + IAI46_04630 0.35 +0.1
993,720 + IAI46_04630 0.36 +0.1
993,910 + IAI46_04630 0.70 -0.2
993,971 + IAI46_04630 0.81 -0.0
993,972 - IAI46_04630 0.81 -2.0
994,004 + IAI46_04630 0.87 +0.6
994,058 + +0.7
994,115 + -1.5
994,116 - +1.2
994,158 - IAI46_04635 0.18 -0.6
994,158 - IAI46_04635 0.18 -0.9
994,158 - IAI46_04635 0.18 -0.6
994,173 + IAI46_04635 0.21 +0.4
994,193 - IAI46_04635 0.25 +0.4
994,282 + IAI46_04635 0.45 -1.9
994,282 + IAI46_04635 0.45 -0.9
994,283 - IAI46_04635 0.45 +0.3
994,389 - IAI46_04635 0.68 +0.5
994,389 - IAI46_04635 0.68 -1.7
994,524 + +0.5
994,525 - +0.1
994,525 - +1.1
994,525 - +0.7
994,527 + -0.7
994,527 + +0.1
994,545 + +1.3
994,557 + -0.5
994,609 + +0.6
994,611 + +0.5
994,623 + -0.2
994,640 + +0.3
994,641 - +1.1
994,752 - +0.5
994,775 + -0.2
994,776 - +1.5
994,903 + IAI46_04640 0.13 -0.8
994,903 + IAI46_04640 0.13 +0.3
994,903 + IAI46_04640 0.13 +0.9
994,903 + IAI46_04640 0.13 +0.4
994,904 - IAI46_04640 0.13 +0.1
994,904 - IAI46_04640 0.13 +0.1
994,904 - IAI46_04640 0.13 +0.5
994,904 - IAI46_04640 0.13 -0.4
994,904 - IAI46_04640 0.13 +0.4
994,904 - IAI46_04640 0.13 -0.4
994,944 + IAI46_04640 0.17 -0.7
994,944 + IAI46_04640 0.17 +1.7
994,945 - IAI46_04640 0.17 -0.4
994,945 - IAI46_04640 0.17 -0.0
994,999 + IAI46_04640 0.22 +0.4
994,999 + IAI46_04640 0.22 -0.5
995,000 - IAI46_04640 0.22 -0.1
995,001 + IAI46_04640 0.22 -0.1
995,002 - IAI46_04640 0.22 -0.1
995,030 + IAI46_04640 0.25 +0.6
995,037 + IAI46_04640 0.25 +0.2
995,038 - IAI46_04640 0.25 +0.6

Or see this region's nucleotide sequence