Strain Fitness in Serratia liquefaciens MT49 around IAI46_04400

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_04390 and IAI46_04395 are separated by 7 nucleotidesIAI46_04395 and IAI46_04400 are separated by 37 nucleotidesIAI46_04400 and IAI46_04405 are separated by 205 nucleotides IAI46_04390: IAI46_04390 - FAD:protein FMN transferase, at 940,020 to 941,051 _04390 IAI46_04395: IAI46_04395 - (Na+)-NQR maturation NqrM, at 941,059 to 941,286 _04395 IAI46_04400: IAI46_04400 - glycerophosphodiester phosphodiesterase, at 941,324 to 942,208 _04400 IAI46_04405: IAI46_04405 - DNA polymerase IV, at 942,414 to 943,475 _04405 Position (kb) 941 942 943Strain fitness (log2 ratio) -1 0 1at 940.344 kb on - strand, within IAI46_04390at 940.533 kb on + strand, within IAI46_04390at 940.533 kb on + strand, within IAI46_04390at 940.533 kb on + strand, within IAI46_04390at 940.534 kb on - strand, within IAI46_04390at 940.757 kb on + strand, within IAI46_04390at 940.757 kb on + strand, within IAI46_04390at 940.757 kb on + strand, within IAI46_04390at 940.757 kb on + strand, within IAI46_04390at 940.757 kb on + strand, within IAI46_04390at 940.758 kb on - strand, within IAI46_04390at 940.779 kb on + strand, within IAI46_04390at 940.780 kb on - strand, within IAI46_04390at 940.811 kb on + strand, within IAI46_04390at 940.811 kb on + strand, within IAI46_04390at 940.811 kb on + strand, within IAI46_04390at 940.812 kb on - strand, within IAI46_04390at 940.814 kb on + strand, within IAI46_04390at 940.814 kb on + strand, within IAI46_04390at 940.815 kb on - strand, within IAI46_04390at 940.815 kb on - strand, within IAI46_04390at 940.815 kb on - strand, within IAI46_04390at 940.816 kb on + strand, within IAI46_04390at 940.817 kb on - strand, within IAI46_04390at 940.817 kb on - strand, within IAI46_04390at 940.817 kb on - strand, within IAI46_04390at 940.817 kb on - strand, within IAI46_04390at 940.817 kb on - strand, within IAI46_04390at 941.010 kb on + strandat 941.010 kb on + strandat 941.058 kb on + strandat 941.058 kb on + strandat 941.112 kb on + strand, within IAI46_04395at 941.112 kb on + strand, within IAI46_04395at 941.113 kb on - strand, within IAI46_04395at 941.125 kb on + strand, within IAI46_04395at 941.126 kb on - strand, within IAI46_04395at 941.133 kb on + strand, within IAI46_04395at 941.134 kb on - strand, within IAI46_04395at 941.140 kb on - strand, within IAI46_04395at 941.169 kb on + strand, within IAI46_04395at 941.188 kb on - strand, within IAI46_04395at 941.280 kb on + strandat 941.280 kb on + strandat 941.281 kb on - strandat 941.288 kb on + strandat 941.289 kb on - strandat 941.289 kb on - strandat 941.325 kb on + strandat 941.326 kb on - strandat 941.326 kb on - strandat 941.382 kb on - strandat 941.406 kb on + strandat 941.423 kb on - strand, within IAI46_04400at 941.426 kb on - strand, within IAI46_04400at 941.525 kb on - strand, within IAI46_04400at 941.841 kb on - strand, within IAI46_04400at 941.946 kb on + strand, within IAI46_04400at 941.946 kb on + strand, within IAI46_04400at 941.946 kb on + strand, within IAI46_04400at 941.946 kb on + strand, within IAI46_04400at 941.947 kb on - strand, within IAI46_04400at 941.947 kb on - strand, within IAI46_04400at 941.947 kb on - strand, within IAI46_04400at 941.947 kb on - strand, within IAI46_04400at 942.000 kb on + strand, within IAI46_04400at 942.002 kb on + strand, within IAI46_04400at 942.002 kb on + strand, within IAI46_04400at 942.131 kb on - strandat 942.162 kb on - strandat 942.186 kb on - strandat 942.210 kb on + strandat 942.210 kb on + strandat 942.235 kb on - strandat 942.240 kb on + strandat 942.246 kb on + strandat 942.247 kb on - strandat 942.275 kb on - strandat 942.275 kb on - strandat 942.275 kb on - strandat 942.275 kb on - strandat 942.275 kb on - strandat 942.277 kb on + strandat 942.278 kb on - strandat 942.312 kb on + strandat 942.334 kb on - strandat 942.391 kb on + strandat 942.549 kb on + strand, within IAI46_04405at 942.550 kb on - strand, within IAI46_04405at 942.550 kb on - strand, within IAI46_04405at 942.621 kb on - strand, within IAI46_04405at 942.648 kb on + strand, within IAI46_04405at 942.669 kb on - strand, within IAI46_04405at 942.730 kb on - strand, within IAI46_04405at 942.882 kb on - strand, within IAI46_04405at 942.897 kb on + strand, within IAI46_04405at 942.897 kb on + strand, within IAI46_04405at 942.897 kb on + strand, within IAI46_04405at 942.898 kb on - strand, within IAI46_04405at 942.902 kb on + strand, within IAI46_04405at 942.902 kb on + strand, within IAI46_04405at 942.905 kb on + strand, within IAI46_04405at 942.905 kb on + strand, within IAI46_04405at 942.906 kb on - strand, within IAI46_04405at 943.049 kb on - strand, within IAI46_04405at 943.049 kb on - strand, within IAI46_04405at 943.075 kb on + strand, within IAI46_04405at 943.075 kb on + strand, within IAI46_04405at 943.148 kb on - strand, within IAI46_04405at 943.148 kb on - strand, within IAI46_04405at 943.148 kb on - strand, within IAI46_04405

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
remove
940,344 - IAI46_04390 0.31 -1.7
940,533 + IAI46_04390 0.50 +0.3
940,533 + IAI46_04390 0.50 +0.2
940,533 + IAI46_04390 0.50 -0.7
940,534 - IAI46_04390 0.50 -0.3
940,757 + IAI46_04390 0.71 +0.1
940,757 + IAI46_04390 0.71 +0.2
940,757 + IAI46_04390 0.71 -0.5
940,757 + IAI46_04390 0.71 -1.7
940,757 + IAI46_04390 0.71 +0.4
940,758 - IAI46_04390 0.72 +0.4
940,779 + IAI46_04390 0.74 -0.5
940,780 - IAI46_04390 0.74 +0.8
940,811 + IAI46_04390 0.77 +0.6
940,811 + IAI46_04390 0.77 +0.3
940,811 + IAI46_04390 0.77 +0.3
940,812 - IAI46_04390 0.77 +0.2
940,814 + IAI46_04390 0.77 -0.5
940,814 + IAI46_04390 0.77 +1.1
940,815 - IAI46_04390 0.77 +0.4
940,815 - IAI46_04390 0.77 -0.1
940,815 - IAI46_04390 0.77 +0.1
940,816 + IAI46_04390 0.77 -0.1
940,817 - IAI46_04390 0.77 -0.4
940,817 - IAI46_04390 0.77 +0.7
940,817 - IAI46_04390 0.77 +0.9
940,817 - IAI46_04390 0.77 +1.4
940,817 - IAI46_04390 0.77 +0.2
941,010 + -0.3
941,010 + -0.2
941,058 + +0.4
941,058 + +0.0
941,112 + IAI46_04395 0.23 +0.4
941,112 + IAI46_04395 0.23 -0.1
941,113 - IAI46_04395 0.24 +1.2
941,125 + IAI46_04395 0.29 +0.5
941,126 - IAI46_04395 0.29 -0.1
941,133 + IAI46_04395 0.32 +0.5
941,134 - IAI46_04395 0.33 +0.0
941,140 - IAI46_04395 0.36 +0.9
941,169 + IAI46_04395 0.48 +0.1
941,188 - IAI46_04395 0.57 +0.2
941,280 + -0.5
941,280 + -0.5
941,281 - -0.6
941,288 + +1.2
941,289 - -0.9
941,289 - +0.5
941,325 + -0.3
941,326 - -0.6
941,326 - +0.5
941,382 - -0.5
941,406 + +0.1
941,423 - IAI46_04400 0.11 -0.2
941,426 - IAI46_04400 0.12 -0.2
941,525 - IAI46_04400 0.23 -0.3
941,841 - IAI46_04400 0.58 +0.3
941,946 + IAI46_04400 0.70 +0.8
941,946 + IAI46_04400 0.70 +0.0
941,946 + IAI46_04400 0.70 -0.0
941,946 + IAI46_04400 0.70 +0.3
941,947 - IAI46_04400 0.70 +1.0
941,947 - IAI46_04400 0.70 +0.5
941,947 - IAI46_04400 0.70 -0.5
941,947 - IAI46_04400 0.70 +0.1
942,000 + IAI46_04400 0.76 +0.2
942,002 + IAI46_04400 0.77 -0.2
942,002 + IAI46_04400 0.77 -0.2
942,131 - -0.3
942,162 - +0.5
942,186 - +0.8
942,210 + +0.8
942,210 + +0.6
942,235 - -0.4
942,240 + -0.6
942,246 + -0.7
942,247 - -0.7
942,275 - -0.2
942,275 - -1.0
942,275 - +0.1
942,275 - +0.1
942,275 - +0.1
942,277 + -0.6
942,278 - -0.8
942,312 + +1.2
942,334 - -0.0
942,391 + +0.2
942,549 + IAI46_04405 0.13 +0.4
942,550 - IAI46_04405 0.13 +0.2
942,550 - IAI46_04405 0.13 -0.2
942,621 - IAI46_04405 0.19 -0.3
942,648 + IAI46_04405 0.22 -0.0
942,669 - IAI46_04405 0.24 +0.5
942,730 - IAI46_04405 0.30 -0.2
942,882 - IAI46_04405 0.44 +0.7
942,897 + IAI46_04405 0.45 +0.2
942,897 + IAI46_04405 0.45 +0.9
942,897 + IAI46_04405 0.45 -1.2
942,898 - IAI46_04405 0.46 -1.4
942,902 + IAI46_04405 0.46 -0.1
942,902 + IAI46_04405 0.46 +0.8
942,905 + IAI46_04405 0.46 +0.1
942,905 + IAI46_04405 0.46 +0.5
942,906 - IAI46_04405 0.46 -0.6
943,049 - IAI46_04405 0.60 +1.4
943,049 - IAI46_04405 0.60 -0.1
943,075 + IAI46_04405 0.62 +0.2
943,075 + IAI46_04405 0.62 +0.9
943,148 - IAI46_04405 0.69 +0.5
943,148 - IAI46_04405 0.69 +0.7
943,148 - IAI46_04405 0.69 +0.7

Or see this region's nucleotide sequence