Strain Fitness in Serratia liquefaciens MT49 around IAI46_03505

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_03495 and IAI46_03500 are separated by 50 nucleotidesIAI46_03500 and IAI46_03505 are separated by 5 nucleotidesIAI46_03505 and IAI46_03510 are separated by 458 nucleotides IAI46_03495: IAI46_03495 - DNA gyrase inhibitor YacG, at 758,105 to 758,296 _03495 IAI46_03500: IAI46_03500 - cell division protein ZapD, at 758,347 to 759,099 _03500 IAI46_03505: IAI46_03505 - dephospho-CoA kinase, at 759,105 to 759,719 _03505 IAI46_03510: IAI46_03510 - GMP reductase, at 760,178 to 761,221 _03510 Position (kb) 759 760Strain fitness (log2 ratio) -2 -1 0 1at 758.296 kb on + strandat 758.296 kb on + strandat 758.296 kb on + strandat 758.296 kb on + strandat 758.296 kb on + strandat 758.296 kb on + strandat 758.297 kb on - strandat 758.297 kb on - strandat 758.300 kb on + strandat 758.300 kb on + strandat 758.300 kb on + strandat 758.300 kb on + strandat 758.301 kb on - strandat 758.308 kb on - strandat 758.372 kb on - strandat 758.372 kb on - strandat 758.372 kb on - strandat 758.427 kb on - strand, within IAI46_03500at 758.436 kb on + strand, within IAI46_03500at 758.437 kb on - strand, within IAI46_03500at 758.446 kb on + strand, within IAI46_03500at 758.447 kb on - strand, within IAI46_03500at 758.456 kb on + strand, within IAI46_03500at 758.457 kb on - strand, within IAI46_03500at 758.482 kb on + strand, within IAI46_03500at 758.483 kb on - strand, within IAI46_03500at 758.483 kb on - strand, within IAI46_03500at 758.583 kb on + strand, within IAI46_03500at 758.583 kb on + strand, within IAI46_03500at 758.584 kb on - strand, within IAI46_03500at 758.584 kb on - strand, within IAI46_03500at 758.584 kb on - strand, within IAI46_03500at 758.629 kb on + strand, within IAI46_03500at 758.637 kb on + strand, within IAI46_03500at 758.637 kb on + strand, within IAI46_03500at 758.638 kb on - strand, within IAI46_03500at 758.737 kb on - strand, within IAI46_03500at 758.737 kb on - strand, within IAI46_03500at 758.838 kb on + strand, within IAI46_03500at 758.839 kb on - strand, within IAI46_03500at 758.839 kb on - strand, within IAI46_03500at 758.839 kb on - strand, within IAI46_03500at 758.903 kb on - strand, within IAI46_03500at 758.914 kb on + strand, within IAI46_03500at 758.914 kb on + strand, within IAI46_03500at 758.915 kb on - strand, within IAI46_03500at 758.915 kb on - strand, within IAI46_03500at 758.915 kb on - strand, within IAI46_03500at 758.990 kb on - strand, within IAI46_03500at 759.106 kb on + strandat 759.107 kb on - strandat 759.107 kb on - strandat 759.107 kb on - strandat 759.713 kb on - strandat 759.723 kb on - strandat 759.756 kb on - strandat 759.767 kb on - strandat 759.791 kb on + strandat 759.792 kb on - strandat 759.825 kb on + strandat 759.825 kb on + strandat 759.826 kb on - strandat 759.946 kb on + strandat 759.947 kb on - strandat 759.956 kb on + strandat 759.956 kb on + strandat 759.956 kb on + strandat 759.956 kb on + strandat 759.957 kb on - strandat 759.957 kb on - strandat 759.957 kb on - strandat 759.961 kb on + strandat 759.987 kb on + strandat 759.987 kb on + strandat 759.988 kb on - strandat 760.046 kb on + strandat 760.046 kb on + strandat 760.046 kb on + strandat 760.046 kb on + strandat 760.046 kb on + strandat 760.047 kb on - strandat 760.047 kb on - strandat 760.050 kb on + strandat 760.050 kb on + strandat 760.050 kb on + strandat 760.050 kb on + strandat 760.050 kb on + strandat 760.050 kb on + strandat 760.050 kb on + strandat 760.050 kb on + strandat 760.050 kb on + strandat 760.051 kb on - strandat 760.051 kb on - strandat 760.051 kb on - strandat 760.051 kb on - strandat 760.051 kb on - strandat 760.051 kb on - strandat 760.051 kb on - strandat 760.054 kb on + strandat 760.054 kb on + strandat 760.055 kb on - strandat 760.055 kb on - strandat 760.055 kb on - strandat 760.102 kb on - strandat 760.111 kb on - strandat 760.111 kb on - strandat 760.112 kb on + strandat 760.113 kb on - strandat 760.157 kb on + strandat 760.158 kb on - strandat 760.158 kb on - strandat 760.172 kb on + strandat 760.173 kb on - strandat 760.173 kb on - strandat 760.183 kb on + strandat 760.183 kb on + strandat 760.210 kb on + strandat 760.283 kb on - strand, within IAI46_03510at 760.303 kb on + strand, within IAI46_03510at 760.303 kb on + strand, within IAI46_03510at 760.304 kb on - strand, within IAI46_03510at 760.304 kb on - strand, within IAI46_03510at 760.401 kb on + strand, within IAI46_03510at 760.412 kb on + strand, within IAI46_03510at 760.419 kb on + strand, within IAI46_03510at 760.419 kb on + strand, within IAI46_03510at 760.533 kb on + strand, within IAI46_03510at 760.534 kb on - strand, within IAI46_03510at 760.552 kb on + strand, within IAI46_03510at 760.553 kb on - strand, within IAI46_03510at 760.553 kb on - strand, within IAI46_03510at 760.553 kb on - strand, within IAI46_03510at 760.553 kb on - strand, within IAI46_03510at 760.566 kb on + strand, within IAI46_03510at 760.636 kb on + strand, within IAI46_03510at 760.636 kb on + strand, within IAI46_03510at 760.636 kb on + strand, within IAI46_03510at 760.636 kb on + strand, within IAI46_03510at 760.637 kb on - strand, within IAI46_03510at 760.637 kb on - strand, within IAI46_03510at 760.637 kb on - strand, within IAI46_03510at 760.637 kb on - strand, within IAI46_03510at 760.637 kb on - strand, within IAI46_03510at 760.649 kb on - strand, within IAI46_03510at 760.682 kb on - strand, within IAI46_03510at 760.682 kb on - strand, within IAI46_03510at 760.705 kb on + strand, within IAI46_03510

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
remove
758,296 + +1.3
758,296 + -0.6
758,296 + +0.0
758,296 + +0.2
758,296 + -0.7
758,296 + +0.3
758,297 - +0.0
758,297 - +0.5
758,300 + -0.5
758,300 + -0.5
758,300 + -0.4
758,300 + +0.5
758,301 - -0.1
758,308 - +0.3
758,372 - +0.2
758,372 - +0.3
758,372 - +1.4
758,427 - IAI46_03500 0.11 +0.3
758,436 + IAI46_03500 0.12 +0.5
758,437 - IAI46_03500 0.12 -0.2
758,446 + IAI46_03500 0.13 -0.2
758,447 - IAI46_03500 0.13 +0.4
758,456 + IAI46_03500 0.14 +1.1
758,457 - IAI46_03500 0.15 +0.3
758,482 + IAI46_03500 0.18 -1.4
758,483 - IAI46_03500 0.18 -0.0
758,483 - IAI46_03500 0.18 -1.5
758,583 + IAI46_03500 0.31 +0.6
758,583 + IAI46_03500 0.31 +0.1
758,584 - IAI46_03500 0.31 +0.9
758,584 - IAI46_03500 0.31 +0.0
758,584 - IAI46_03500 0.31 +0.5
758,629 + IAI46_03500 0.37 +0.2
758,637 + IAI46_03500 0.39 +0.6
758,637 + IAI46_03500 0.39 +0.4
758,638 - IAI46_03500 0.39 +0.7
758,737 - IAI46_03500 0.52 +0.1
758,737 - IAI46_03500 0.52 +0.5
758,838 + IAI46_03500 0.65 +1.1
758,839 - IAI46_03500 0.65 -0.5
758,839 - IAI46_03500 0.65 -1.1
758,839 - IAI46_03500 0.65 -1.3
758,903 - IAI46_03500 0.74 +0.1
758,914 + IAI46_03500 0.75 +0.2
758,914 + IAI46_03500 0.75 -0.3
758,915 - IAI46_03500 0.75 +1.3
758,915 - IAI46_03500 0.75 -0.3
758,915 - IAI46_03500 0.75 +0.0
758,990 - IAI46_03500 0.85 +0.3
759,106 + -1.1
759,107 - +0.1
759,107 - -0.3
759,107 - +0.4
759,713 - +0.7
759,723 - -0.3
759,756 - +0.6
759,767 - +1.6
759,791 + +0.7
759,792 - +0.3
759,825 + -0.0
759,825 + +1.1
759,826 - +0.5
759,946 + -1.6
759,947 - -0.3
759,956 + +0.2
759,956 + -0.2
759,956 + +0.4
759,956 + +1.3
759,957 - +0.3
759,957 - -1.8
759,957 - +0.1
759,961 + +0.2
759,987 + -0.8
759,987 + +1.0
759,988 - +0.3
760,046 + +0.4
760,046 + +0.1
760,046 + -0.2
760,046 + +1.1
760,046 + +0.3
760,047 - +0.2
760,047 - -0.1
760,050 + +1.2
760,050 + +0.8
760,050 + +0.1
760,050 + +0.5
760,050 + +0.2
760,050 + -0.2
760,050 + +0.4
760,050 + +0.5
760,050 + +0.1
760,051 - +0.2
760,051 - -0.4
760,051 - +0.9
760,051 - +1.0
760,051 - +1.2
760,051 - +0.2
760,051 - -0.5
760,054 + -0.1
760,054 + -0.3
760,055 - -0.5
760,055 - -0.1
760,055 - +0.1
760,102 - +0.0
760,111 - -0.9
760,111 - +0.1
760,112 + +0.5
760,113 - -0.2
760,157 + +0.8
760,158 - +0.5
760,158 - +0.3
760,172 + +0.9
760,173 - +0.9
760,173 - +0.8
760,183 + +1.0
760,183 + -0.6
760,210 + +0.6
760,283 - IAI46_03510 0.10 +1.0
760,303 + IAI46_03510 0.12 +0.3
760,303 + IAI46_03510 0.12 +1.0
760,304 - IAI46_03510 0.12 +0.6
760,304 - IAI46_03510 0.12 -0.6
760,401 + IAI46_03510 0.21 +1.1
760,412 + IAI46_03510 0.22 +0.9
760,419 + IAI46_03510 0.23 +0.3
760,419 + IAI46_03510 0.23 -1.3
760,533 + IAI46_03510 0.34 +0.0
760,534 - IAI46_03510 0.34 +0.5
760,552 + IAI46_03510 0.36 -0.7
760,553 - IAI46_03510 0.36 +1.4
760,553 - IAI46_03510 0.36 -0.5
760,553 - IAI46_03510 0.36 -0.0
760,553 - IAI46_03510 0.36 -0.2
760,566 + IAI46_03510 0.37 -0.5
760,636 + IAI46_03510 0.44 -0.7
760,636 + IAI46_03510 0.44 +0.9
760,636 + IAI46_03510 0.44 +0.6
760,636 + IAI46_03510 0.44 +0.3
760,637 - IAI46_03510 0.44 -0.0
760,637 - IAI46_03510 0.44 +0.6
760,637 - IAI46_03510 0.44 -0.0
760,637 - IAI46_03510 0.44 +0.4
760,637 - IAI46_03510 0.44 -0.7
760,649 - IAI46_03510 0.45 +0.3
760,682 - IAI46_03510 0.48 -0.7
760,682 - IAI46_03510 0.48 -0.2
760,705 + IAI46_03510 0.50 +0.7

Or see this region's nucleotide sequence