Strain Fitness in Serratia liquefaciens MT49 around IAI46_02900

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02895 and IAI46_02900 overlap by 4 nucleotidesIAI46_02900 and IAI46_02905 are separated by 207 nucleotides IAI46_02895: IAI46_02895 - patatin family protein, at 617,272 to 618,393 _02895 IAI46_02900: IAI46_02900 - TatD family hydrolase, at 618,390 to 619,166 _02900 IAI46_02905: IAI46_02905 - NupC/NupG family nucleoside CNT transporter, at 619,374 to 620,639 _02905 Position (kb) 618 619 620Strain fitness (log2 ratio) -1 0 1 2at 617.500 kb on + strand, within IAI46_02895at 617.500 kb on + strand, within IAI46_02895at 617.548 kb on - strand, within IAI46_02895at 617.579 kb on + strand, within IAI46_02895at 617.607 kb on + strand, within IAI46_02895at 617.607 kb on + strand, within IAI46_02895at 617.607 kb on + strand, within IAI46_02895at 617.608 kb on - strand, within IAI46_02895at 617.713 kb on + strand, within IAI46_02895at 617.713 kb on + strand, within IAI46_02895at 617.713 kb on + strand, within IAI46_02895at 617.713 kb on + strand, within IAI46_02895at 617.784 kb on + strand, within IAI46_02895at 617.812 kb on + strand, within IAI46_02895at 617.813 kb on - strand, within IAI46_02895at 617.911 kb on + strand, within IAI46_02895at 617.911 kb on + strand, within IAI46_02895at 617.912 kb on - strand, within IAI46_02895at 617.912 kb on - strand, within IAI46_02895at 617.912 kb on - strand, within IAI46_02895at 617.912 kb on - strand, within IAI46_02895at 617.914 kb on + strand, within IAI46_02895at 617.914 kb on + strand, within IAI46_02895at 617.914 kb on + strand, within IAI46_02895at 617.915 kb on - strand, within IAI46_02895at 617.915 kb on - strand, within IAI46_02895at 617.915 kb on - strand, within IAI46_02895at 618.007 kb on + strand, within IAI46_02895at 618.131 kb on - strand, within IAI46_02895at 618.131 kb on - strand, within IAI46_02895at 618.131 kb on - strand, within IAI46_02895at 618.158 kb on - strand, within IAI46_02895at 618.210 kb on + strand, within IAI46_02895at 618.210 kb on + strand, within IAI46_02895at 618.211 kb on - strand, within IAI46_02895at 618.211 kb on - strand, within IAI46_02895at 618.264 kb on + strand, within IAI46_02895at 618.265 kb on - strand, within IAI46_02895at 618.265 kb on - strand, within IAI46_02895at 618.265 kb on - strand, within IAI46_02895at 618.366 kb on - strandat 618.487 kb on + strand, within IAI46_02900at 618.488 kb on - strand, within IAI46_02900at 618.488 kb on - strand, within IAI46_02900at 618.494 kb on + strand, within IAI46_02900at 618.494 kb on + strand, within IAI46_02900at 618.495 kb on - strand, within IAI46_02900at 618.498 kb on - strand, within IAI46_02900at 618.498 kb on - strand, within IAI46_02900at 618.539 kb on - strand, within IAI46_02900at 618.594 kb on + strand, within IAI46_02900at 618.594 kb on + strand, within IAI46_02900at 618.594 kb on + strand, within IAI46_02900at 618.595 kb on - strand, within IAI46_02900at 618.595 kb on - strand, within IAI46_02900at 618.595 kb on - strand, within IAI46_02900at 618.595 kb on - strand, within IAI46_02900at 618.595 kb on - strand, within IAI46_02900at 618.595 kb on - strand, within IAI46_02900at 618.595 kb on - strand, within IAI46_02900at 618.595 kb on - strand, within IAI46_02900at 618.596 kb on + strand, within IAI46_02900at 618.596 kb on + strand, within IAI46_02900at 618.596 kb on + strand, within IAI46_02900at 618.596 kb on + strand, within IAI46_02900at 618.597 kb on - strand, within IAI46_02900at 618.597 kb on - strand, within IAI46_02900at 618.696 kb on + strand, within IAI46_02900at 618.696 kb on + strand, within IAI46_02900at 618.696 kb on + strand, within IAI46_02900at 618.696 kb on + strand, within IAI46_02900at 618.696 kb on + strand, within IAI46_02900at 618.696 kb on + strand, within IAI46_02900at 618.697 kb on - strand, within IAI46_02900at 618.697 kb on - strand, within IAI46_02900at 618.697 kb on - strand, within IAI46_02900at 618.697 kb on - strand, within IAI46_02900at 618.697 kb on - strand, within IAI46_02900at 618.697 kb on - strand, within IAI46_02900at 618.697 kb on - strand, within IAI46_02900at 618.697 kb on - strand, within IAI46_02900at 618.698 kb on + strand, within IAI46_02900at 618.698 kb on + strand, within IAI46_02900at 618.831 kb on - strand, within IAI46_02900at 618.856 kb on + strand, within IAI46_02900at 618.856 kb on + strand, within IAI46_02900at 618.857 kb on - strand, within IAI46_02900at 618.857 kb on - strand, within IAI46_02900at 618.910 kb on - strand, within IAI46_02900at 618.910 kb on - strand, within IAI46_02900at 618.912 kb on + strand, within IAI46_02900at 618.912 kb on + strand, within IAI46_02900at 618.913 kb on - strand, within IAI46_02900at 618.913 kb on - strand, within IAI46_02900at 618.940 kb on - strand, within IAI46_02900at 618.940 kb on - strand, within IAI46_02900at 619.164 kb on + strandat 619.246 kb on - strandat 619.262 kb on + strandat 619.262 kb on + strandat 619.276 kb on + strandat 619.277 kb on - strandat 619.294 kb on - strandat 619.299 kb on - strandat 619.299 kb on - strandat 619.354 kb on + strandat 619.355 kb on - strandat 619.355 kb on - strandat 619.503 kb on + strand, within IAI46_02905at 619.503 kb on + strand, within IAI46_02905at 619.504 kb on - strand, within IAI46_02905at 619.663 kb on + strand, within IAI46_02905at 619.707 kb on + strand, within IAI46_02905at 619.707 kb on + strand, within IAI46_02905at 619.707 kb on + strand, within IAI46_02905at 619.708 kb on - strand, within IAI46_02905at 619.708 kb on - strand, within IAI46_02905at 619.708 kb on - strand, within IAI46_02905at 619.708 kb on - strand, within IAI46_02905at 619.710 kb on + strand, within IAI46_02905at 619.710 kb on + strand, within IAI46_02905at 619.711 kb on - strand, within IAI46_02905at 619.772 kb on + strand, within IAI46_02905at 619.850 kb on + strand, within IAI46_02905at 619.851 kb on + strand, within IAI46_02905at 619.852 kb on - strand, within IAI46_02905at 619.852 kb on - strand, within IAI46_02905at 619.852 kb on - strand, within IAI46_02905at 619.884 kb on - strand, within IAI46_02905at 619.936 kb on - strand, within IAI46_02905at 619.963 kb on - strand, within IAI46_02905at 619.982 kb on + strand, within IAI46_02905at 619.982 kb on + strand, within IAI46_02905

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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617,500 + IAI46_02895 0.20 +0.3
617,500 + IAI46_02895 0.20 +0.4
617,548 - IAI46_02895 0.25 +0.1
617,579 + IAI46_02895 0.27 -0.1
617,607 + IAI46_02895 0.30 +0.2
617,607 + IAI46_02895 0.30 -0.7
617,607 + IAI46_02895 0.30 -0.9
617,608 - IAI46_02895 0.30 -0.2
617,713 + IAI46_02895 0.39 -0.3
617,713 + IAI46_02895 0.39 +0.8
617,713 + IAI46_02895 0.39 -0.4
617,713 + IAI46_02895 0.39 -0.1
617,784 + IAI46_02895 0.46 -0.2
617,812 + IAI46_02895 0.48 +0.5
617,813 - IAI46_02895 0.48 -0.3
617,911 + IAI46_02895 0.57 +1.3
617,911 + IAI46_02895 0.57 +0.4
617,912 - IAI46_02895 0.57 +0.7
617,912 - IAI46_02895 0.57 +0.2
617,912 - IAI46_02895 0.57 +0.0
617,912 - IAI46_02895 0.57 +1.8
617,914 + IAI46_02895 0.57 -0.4
617,914 + IAI46_02895 0.57 +1.8
617,914 + IAI46_02895 0.57 +0.4
617,915 - IAI46_02895 0.57 -0.2
617,915 - IAI46_02895 0.57 -0.4
617,915 - IAI46_02895 0.57 +0.2
618,007 + IAI46_02895 0.66 +0.6
618,131 - IAI46_02895 0.77 +1.9
618,131 - IAI46_02895 0.77 -0.3
618,131 - IAI46_02895 0.77 +0.4
618,158 - IAI46_02895 0.79 +0.6
618,210 + IAI46_02895 0.84 +0.1
618,210 + IAI46_02895 0.84 -0.8
618,211 - IAI46_02895 0.84 -0.6
618,211 - IAI46_02895 0.84 -0.6
618,264 + IAI46_02895 0.88 +0.3
618,265 - IAI46_02895 0.89 +1.5
618,265 - IAI46_02895 0.89 +0.3
618,265 - IAI46_02895 0.89 +0.2
618,366 - -0.6
618,487 + IAI46_02900 0.12 -0.2
618,488 - IAI46_02900 0.13 +0.2
618,488 - IAI46_02900 0.13 +0.2
618,494 + IAI46_02900 0.13 +0.2
618,494 + IAI46_02900 0.13 +0.1
618,495 - IAI46_02900 0.14 -1.3
618,498 - IAI46_02900 0.14 +1.4
618,498 - IAI46_02900 0.14 +0.8
618,539 - IAI46_02900 0.19 +0.6
618,594 + IAI46_02900 0.26 -0.6
618,594 + IAI46_02900 0.26 +0.5
618,594 + IAI46_02900 0.26 -0.6
618,595 - IAI46_02900 0.26 +0.3
618,595 - IAI46_02900 0.26 -1.6
618,595 - IAI46_02900 0.26 -0.9
618,595 - IAI46_02900 0.26 -0.3
618,595 - IAI46_02900 0.26 +0.4
618,595 - IAI46_02900 0.26 -0.4
618,595 - IAI46_02900 0.26 -0.4
618,595 - IAI46_02900 0.26 +0.4
618,596 + IAI46_02900 0.27 +0.3
618,596 + IAI46_02900 0.27 +0.8
618,596 + IAI46_02900 0.27 +1.3
618,596 + IAI46_02900 0.27 +0.0
618,597 - IAI46_02900 0.27 +1.2
618,597 - IAI46_02900 0.27 -0.3
618,696 + IAI46_02900 0.39 +0.7
618,696 + IAI46_02900 0.39 +1.2
618,696 + IAI46_02900 0.39 -0.8
618,696 + IAI46_02900 0.39 +0.2
618,696 + IAI46_02900 0.39 -0.3
618,696 + IAI46_02900 0.39 +0.1
618,697 - IAI46_02900 0.40 -0.5
618,697 - IAI46_02900 0.40 -0.9
618,697 - IAI46_02900 0.40 +0.2
618,697 - IAI46_02900 0.40 -0.1
618,697 - IAI46_02900 0.40 +0.8
618,697 - IAI46_02900 0.40 -0.3
618,697 - IAI46_02900 0.40 +1.1
618,697 - IAI46_02900 0.40 +0.3
618,698 + IAI46_02900 0.40 +1.2
618,698 + IAI46_02900 0.40 +0.0
618,831 - IAI46_02900 0.57 -0.2
618,856 + IAI46_02900 0.60 +0.6
618,856 + IAI46_02900 0.60 -0.2
618,857 - IAI46_02900 0.60 +0.2
618,857 - IAI46_02900 0.60 +1.5
618,910 - IAI46_02900 0.67 -0.2
618,910 - IAI46_02900 0.67 +0.3
618,912 + IAI46_02900 0.67 -0.5
618,912 + IAI46_02900 0.67 +0.4
618,913 - IAI46_02900 0.67 -1.2
618,913 - IAI46_02900 0.67 -0.1
618,940 - IAI46_02900 0.71 +0.5
618,940 - IAI46_02900 0.71 -0.2
619,164 + +0.3
619,246 - -0.2
619,262 + -1.5
619,262 + +0.9
619,276 + -0.1
619,277 - +0.7
619,294 - +0.6
619,299 - +0.6
619,299 - +1.2
619,354 + -0.6
619,355 - +0.5
619,355 - +0.9
619,503 + IAI46_02905 0.10 -0.9
619,503 + IAI46_02905 0.10 +2.5
619,504 - IAI46_02905 0.10 +0.4
619,663 + IAI46_02905 0.23 +1.2
619,707 + IAI46_02905 0.26 +0.5
619,707 + IAI46_02905 0.26 +1.4
619,707 + IAI46_02905 0.26 +1.1
619,708 - IAI46_02905 0.26 -0.0
619,708 - IAI46_02905 0.26 +1.1
619,708 - IAI46_02905 0.26 +0.7
619,708 - IAI46_02905 0.26 -0.9
619,710 + IAI46_02905 0.27 +0.2
619,710 + IAI46_02905 0.27 -0.8
619,711 - IAI46_02905 0.27 -0.1
619,772 + IAI46_02905 0.31 +0.8
619,850 + IAI46_02905 0.38 +0.5
619,851 + IAI46_02905 0.38 +0.5
619,852 - IAI46_02905 0.38 -0.4
619,852 - IAI46_02905 0.38 +0.2
619,852 - IAI46_02905 0.38 +0.4
619,884 - IAI46_02905 0.40 -0.2
619,936 - IAI46_02905 0.44 +0.0
619,963 - IAI46_02905 0.47 -0.6
619,982 + IAI46_02905 0.48 +1.2
619,982 + IAI46_02905 0.48 +0.3

Or see this region's nucleotide sequence