Strain Fitness in Serratia liquefaciens MT49 around IAI46_02885

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02880 and IAI46_02885 are separated by 155 nucleotidesIAI46_02885 and IAI46_02890 are separated by 325 nucleotidesIAI46_02890 and IAI46_02895 are separated by 10 nucleotides IAI46_02880: IAI46_02880 - molecular chaperone OsmY, at 615,819 to 616,433 _02880 IAI46_02885: IAI46_02885 - DUF1328 domain-containing protein, at 616,589 to 616,750 _02885 IAI46_02890: IAI46_02890 - stress-response protein, at 617,076 to 617,261 _02890 IAI46_02895: IAI46_02895 - patatin family protein, at 617,272 to 618,393 _02895 Position (kb) 616 617Strain fitness (log2 ratio) -2 -1 0 1at 615.630 kb on - strandat 615.681 kb on + strandat 615.707 kb on + strandat 615.707 kb on + strandat 615.729 kb on - strandat 615.743 kb on - strandat 615.743 kb on - strandat 615.743 kb on - strandat 615.801 kb on - strandat 615.902 kb on + strand, within IAI46_02880at 615.903 kb on - strand, within IAI46_02880at 615.903 kb on - strand, within IAI46_02880at 615.936 kb on - strand, within IAI46_02880at 615.981 kb on + strand, within IAI46_02880at 615.981 kb on + strand, within IAI46_02880at 615.982 kb on - strand, within IAI46_02880at 615.982 kb on - strand, within IAI46_02880at 615.982 kb on - strand, within IAI46_02880at 616.043 kb on + strand, within IAI46_02880at 616.044 kb on - strand, within IAI46_02880at 616.055 kb on + strand, within IAI46_02880at 616.056 kb on - strand, within IAI46_02880at 616.056 kb on - strand, within IAI46_02880at 616.079 kb on + strand, within IAI46_02880at 616.218 kb on + strand, within IAI46_02880at 616.218 kb on + strand, within IAI46_02880at 616.219 kb on - strand, within IAI46_02880at 616.219 kb on - strand, within IAI46_02880at 616.219 kb on - strand, within IAI46_02880at 616.219 kb on - strand, within IAI46_02880at 616.420 kb on + strandat 616.420 kb on + strandat 616.420 kb on + strandat 616.421 kb on - strandat 616.421 kb on - strandat 616.421 kb on - strandat 616.421 kb on - strandat 616.424 kb on + strandat 616.425 kb on - strandat 616.425 kb on - strandat 616.425 kb on - strandat 616.431 kb on + strandat 616.431 kb on + strandat 616.438 kb on + strandat 616.441 kb on + strandat 616.441 kb on + strandat 616.442 kb on - strandat 616.453 kb on + strandat 616.453 kb on + strandat 616.453 kb on + strandat 616.454 kb on - strandat 616.454 kb on - strandat 616.572 kb on - strandat 616.572 kb on - strandat 616.572 kb on - strandat 616.576 kb on + strandat 616.589 kb on - strandat 616.607 kb on - strand, within IAI46_02885at 616.642 kb on - strand, within IAI46_02885at 616.748 kb on + strandat 616.748 kb on + strandat 616.749 kb on - strandat 616.749 kb on - strandat 616.765 kb on + strandat 616.825 kb on + strandat 616.825 kb on + strandat 616.825 kb on + strandat 616.825 kb on + strandat 616.825 kb on + strandat 616.826 kb on - strandat 616.834 kb on + strandat 616.835 kb on - strandat 616.835 kb on - strandat 616.917 kb on + strandat 616.928 kb on + strandat 617.000 kb on + strandat 617.001 kb on - strandat 617.044 kb on + strandat 617.081 kb on + strandat 617.201 kb on - strand, within IAI46_02890at 617.214 kb on + strand, within IAI46_02890at 617.237 kb on - strand, within IAI46_02890at 617.237 kb on - strand, within IAI46_02890at 617.279 kb on - strandat 617.285 kb on + strandat 617.306 kb on + strandat 617.306 kb on + strandat 617.306 kb on + strandat 617.306 kb on + strandat 617.307 kb on - strandat 617.307 kb on - strandat 617.307 kb on - strandat 617.307 kb on - strandat 617.320 kb on + strandat 617.355 kb on - strandat 617.355 kb on - strandat 617.355 kb on - strandat 617.386 kb on - strand, within IAI46_02895at 617.500 kb on + strand, within IAI46_02895at 617.500 kb on + strand, within IAI46_02895at 617.548 kb on - strand, within IAI46_02895at 617.579 kb on + strand, within IAI46_02895at 617.607 kb on + strand, within IAI46_02895at 617.607 kb on + strand, within IAI46_02895at 617.607 kb on + strand, within IAI46_02895at 617.608 kb on - strand, within IAI46_02895at 617.713 kb on + strand, within IAI46_02895at 617.713 kb on + strand, within IAI46_02895at 617.713 kb on + strand, within IAI46_02895at 617.713 kb on + strand, within IAI46_02895

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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615,630 - -0.2
615,681 + +0.1
615,707 + +1.4
615,707 + +0.1
615,729 - -0.4
615,743 - -0.5
615,743 - -0.3
615,743 - +0.2
615,801 - -1.0
615,902 + IAI46_02880 0.13 -0.1
615,903 - IAI46_02880 0.14 +1.1
615,903 - IAI46_02880 0.14 -0.0
615,936 - IAI46_02880 0.19 +1.0
615,981 + IAI46_02880 0.26 +0.0
615,981 + IAI46_02880 0.26 -1.2
615,982 - IAI46_02880 0.27 +0.4
615,982 - IAI46_02880 0.27 -1.1
615,982 - IAI46_02880 0.27 -0.5
616,043 + IAI46_02880 0.36 +1.1
616,044 - IAI46_02880 0.37 +0.2
616,055 + IAI46_02880 0.38 +0.5
616,056 - IAI46_02880 0.39 -0.2
616,056 - IAI46_02880 0.39 +1.0
616,079 + IAI46_02880 0.42 -0.1
616,218 + IAI46_02880 0.65 -0.5
616,218 + IAI46_02880 0.65 -0.3
616,219 - IAI46_02880 0.65 +0.5
616,219 - IAI46_02880 0.65 -0.4
616,219 - IAI46_02880 0.65 -0.1
616,219 - IAI46_02880 0.65 +0.9
616,420 + +0.0
616,420 + +0.5
616,420 + +0.2
616,421 - -0.5
616,421 - -0.5
616,421 - +0.4
616,421 - -1.9
616,424 + +0.3
616,425 - -0.1
616,425 - -0.7
616,425 - -0.3
616,431 + -0.9
616,431 + +0.2
616,438 + +0.4
616,441 + -0.3
616,441 + -0.8
616,442 - -0.7
616,453 + +0.5
616,453 + +0.2
616,453 + +0.0
616,454 - -0.7
616,454 - -0.7
616,572 - +0.3
616,572 - -0.7
616,572 - -0.1
616,576 + +0.7
616,589 - -0.0
616,607 - IAI46_02885 0.11 +0.5
616,642 - IAI46_02885 0.33 +0.1
616,748 + -0.1
616,748 + +0.2
616,749 - -0.1
616,749 - +1.0
616,765 + -0.0
616,825 + -0.6
616,825 + +0.1
616,825 + +0.4
616,825 + -0.3
616,825 + +0.2
616,826 - +0.0
616,834 + -0.4
616,835 - -1.9
616,835 - -0.3
616,917 + +0.9
616,928 + +1.1
617,000 + -0.0
617,001 - +0.3
617,044 + +0.7
617,081 + +0.0
617,201 - IAI46_02890 0.67 +0.2
617,214 + IAI46_02890 0.74 -0.4
617,237 - IAI46_02890 0.87 +0.2
617,237 - IAI46_02890 0.87 -0.3
617,279 - -0.4
617,285 + +0.7
617,306 + -0.3
617,306 + -0.1
617,306 + -0.3
617,306 + +0.7
617,307 - -0.2
617,307 - +0.1
617,307 - -0.2
617,307 - +0.2
617,320 + +0.2
617,355 - +0.2
617,355 - -0.5
617,355 - +1.5
617,386 - IAI46_02895 0.10 -0.1
617,500 + IAI46_02895 0.20 +0.3
617,500 + IAI46_02895 0.20 +0.4
617,548 - IAI46_02895 0.25 +0.1
617,579 + IAI46_02895 0.27 -0.1
617,607 + IAI46_02895 0.30 +0.2
617,607 + IAI46_02895 0.30 -0.7
617,607 + IAI46_02895 0.30 -0.9
617,608 - IAI46_02895 0.30 -0.2
617,713 + IAI46_02895 0.39 -0.3
617,713 + IAI46_02895 0.39 +0.8
617,713 + IAI46_02895 0.39 -0.4
617,713 + IAI46_02895 0.39 -0.1

Or see this region's nucleotide sequence