Strain Fitness in Serratia liquefaciens MT49 around IAI46_02730

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_02720 and IAI46_02725 are separated by 359 nucleotidesIAI46_02725 and IAI46_02730 overlap by 4 nucleotidesIAI46_02730 and IAI46_02735 overlap by 4 nucleotides IAI46_02720: IAI46_02720 - homoprotocatechuate degradation operon regulator HpaR, at 586,754 to 587,206 _02720 IAI46_02725: IAI46_02725 - fumarylacetoacetate hydrolase family protein, at 587,566 to 588,198 _02725 IAI46_02730: IAI46_02730 - fumarylacetoacetate hydrolase family protein, at 588,195 to 588,959 _02730 IAI46_02735: IAI46_02735 - 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase, at 588,956 to 590,410 _02735 Position (kb) 588 589Strain fitness (log2 ratio) -1 0 1 2at 587.206 kb on + strandat 587.206 kb on + strandat 587.206 kb on + strandat 587.207 kb on - strandat 587.207 kb on - strandat 587.207 kb on - strandat 587.207 kb on - strandat 587.222 kb on + strandat 587.223 kb on - strandat 587.223 kb on - strandat 587.224 kb on + strandat 587.225 kb on - strandat 587.225 kb on - strandat 587.237 kb on + strandat 587.237 kb on + strandat 587.250 kb on - strandat 587.250 kb on - strandat 587.289 kb on + strandat 587.412 kb on - strandat 587.412 kb on - strandat 587.499 kb on - strandat 587.500 kb on + strandat 587.501 kb on - strandat 587.613 kb on - strandat 587.649 kb on + strand, within IAI46_02725at 587.649 kb on + strand, within IAI46_02725at 587.650 kb on - strand, within IAI46_02725at 587.818 kb on + strand, within IAI46_02725at 587.819 kb on - strand, within IAI46_02725at 587.969 kb on - strand, within IAI46_02725at 588.055 kb on - strand, within IAI46_02725at 588.055 kb on - strand, within IAI46_02725at 588.173 kb on + strandat 588.233 kb on + strandat 588.234 kb on - strandat 588.351 kb on + strand, within IAI46_02730at 588.471 kb on + strand, within IAI46_02730at 588.471 kb on + strand, within IAI46_02730at 588.472 kb on - strand, within IAI46_02730at 588.472 kb on - strand, within IAI46_02730at 588.472 kb on - strand, within IAI46_02730at 588.472 kb on - strand, within IAI46_02730at 588.473 kb on + strand, within IAI46_02730at 588.473 kb on + strand, within IAI46_02730at 588.473 kb on + strand, within IAI46_02730at 588.473 kb on + strand, within IAI46_02730at 588.473 kb on + strand, within IAI46_02730at 588.473 kb on + strand, within IAI46_02730at 588.474 kb on - strand, within IAI46_02730at 588.474 kb on - strand, within IAI46_02730at 588.474 kb on - strand, within IAI46_02730at 588.474 kb on - strand, within IAI46_02730at 588.480 kb on + strand, within IAI46_02730at 588.481 kb on - strand, within IAI46_02730at 588.549 kb on + strand, within IAI46_02730at 588.550 kb on - strand, within IAI46_02730at 588.550 kb on - strand, within IAI46_02730at 588.561 kb on + strand, within IAI46_02730at 588.562 kb on - strand, within IAI46_02730at 588.580 kb on - strand, within IAI46_02730at 588.606 kb on + strand, within IAI46_02730at 588.610 kb on - strand, within IAI46_02730at 588.663 kb on + strand, within IAI46_02730at 588.663 kb on + strand, within IAI46_02730at 588.663 kb on + strand, within IAI46_02730at 588.663 kb on + strand, within IAI46_02730at 588.663 kb on + strand, within IAI46_02730at 588.663 kb on + strand, within IAI46_02730at 588.664 kb on - strand, within IAI46_02730at 588.717 kb on + strand, within IAI46_02730at 588.717 kb on + strand, within IAI46_02730at 588.717 kb on + strand, within IAI46_02730at 588.778 kb on - strand, within IAI46_02730at 588.789 kb on + strand, within IAI46_02730at 588.790 kb on - strand, within IAI46_02730at 589.007 kb on + strandat 589.015 kb on + strandat 589.015 kb on + strandat 589.322 kb on + strand, within IAI46_02735at 589.323 kb on - strand, within IAI46_02735at 589.323 kb on - strand, within IAI46_02735at 589.349 kb on + strand, within IAI46_02735at 589.349 kb on + strand, within IAI46_02735at 589.350 kb on - strand, within IAI46_02735at 589.350 kb on - strand, within IAI46_02735at 589.597 kb on + strand, within IAI46_02735at 589.597 kb on + strand, within IAI46_02735at 589.597 kb on + strand, within IAI46_02735at 589.598 kb on - strand, within IAI46_02735at 589.598 kb on - strand, within IAI46_02735at 589.810 kb on + strand, within IAI46_02735at 589.950 kb on - strand, within IAI46_02735at 589.950 kb on - strand, within IAI46_02735at 589.950 kb on - strand, within IAI46_02735

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
remove
587,206 + +0.3
587,206 + -0.2
587,206 + -0.6
587,207 - +0.1
587,207 - +0.9
587,207 - -0.0
587,207 - -0.2
587,222 + +0.4
587,223 - +0.5
587,223 - +0.1
587,224 + +0.1
587,225 - +1.1
587,225 - +1.3
587,237 + +1.2
587,237 + +0.2
587,250 - -0.4
587,250 - +0.3
587,289 + -1.3
587,412 - +0.1
587,412 - -0.3
587,499 - +0.1
587,500 + +0.7
587,501 - +0.3
587,613 - -0.5
587,649 + IAI46_02725 0.13 -0.5
587,649 + IAI46_02725 0.13 -1.2
587,650 - IAI46_02725 0.13 -0.7
587,818 + IAI46_02725 0.40 -0.1
587,819 - IAI46_02725 0.40 +1.6
587,969 - IAI46_02725 0.64 +0.2
588,055 - IAI46_02725 0.77 +0.5
588,055 - IAI46_02725 0.77 +1.1
588,173 + +0.1
588,233 + +0.2
588,234 - +0.2
588,351 + IAI46_02730 0.20 +0.0
588,471 + IAI46_02730 0.36 +0.4
588,471 + IAI46_02730 0.36 +0.1
588,472 - IAI46_02730 0.36 +0.1
588,472 - IAI46_02730 0.36 -1.1
588,472 - IAI46_02730 0.36 -0.3
588,472 - IAI46_02730 0.36 -0.3
588,473 + IAI46_02730 0.36 +0.3
588,473 + IAI46_02730 0.36 -0.2
588,473 + IAI46_02730 0.36 +0.3
588,473 + IAI46_02730 0.36 -0.6
588,473 + IAI46_02730 0.36 +0.1
588,473 + IAI46_02730 0.36 +0.2
588,474 - IAI46_02730 0.36 +0.5
588,474 - IAI46_02730 0.36 +0.1
588,474 - IAI46_02730 0.36 +0.6
588,474 - IAI46_02730 0.36 +2.5
588,480 + IAI46_02730 0.37 +0.3
588,481 - IAI46_02730 0.37 +0.3
588,549 + IAI46_02730 0.46 -0.9
588,550 - IAI46_02730 0.46 +0.8
588,550 - IAI46_02730 0.46 +1.2
588,561 + IAI46_02730 0.48 +0.2
588,562 - IAI46_02730 0.48 -0.4
588,580 - IAI46_02730 0.50 +1.3
588,606 + IAI46_02730 0.54 +1.2
588,610 - IAI46_02730 0.54 -0.4
588,663 + IAI46_02730 0.61 +0.2
588,663 + IAI46_02730 0.61 +0.1
588,663 + IAI46_02730 0.61 +0.3
588,663 + IAI46_02730 0.61 -0.7
588,663 + IAI46_02730 0.61 +0.3
588,663 + IAI46_02730 0.61 -0.2
588,664 - IAI46_02730 0.61 -0.3
588,717 + IAI46_02730 0.68 +0.3
588,717 + IAI46_02730 0.68 +0.1
588,717 + IAI46_02730 0.68 -0.5
588,778 - IAI46_02730 0.76 -0.0
588,789 + IAI46_02730 0.78 -0.2
588,790 - IAI46_02730 0.78 +0.4
589,007 + +0.2
589,015 + -0.9
589,015 + +1.0
589,322 + IAI46_02735 0.25 +0.1
589,323 - IAI46_02735 0.25 -1.0
589,323 - IAI46_02735 0.25 -0.1
589,349 + IAI46_02735 0.27 +0.6
589,349 + IAI46_02735 0.27 +2.1
589,350 - IAI46_02735 0.27 -0.7
589,350 - IAI46_02735 0.27 -0.5
589,597 + IAI46_02735 0.44 -0.1
589,597 + IAI46_02735 0.44 +0.3
589,597 + IAI46_02735 0.44 -0.7
589,598 - IAI46_02735 0.44 +0.3
589,598 - IAI46_02735 0.44 +0.5
589,810 + IAI46_02735 0.59 -0.2
589,950 - IAI46_02735 0.68 -0.1
589,950 - IAI46_02735 0.68 -0.5
589,950 - IAI46_02735 0.68 +0.5

Or see this region's nucleotide sequence