Strain Fitness in Serratia liquefaciens MT49 around IAI46_02705

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_02695 and IAI46_02700 overlap by 26 nucleotidesIAI46_02700 and IAI46_02705 overlap by 8 nucleotidesIAI46_02705 and IAI46_02710 are separated by 10 nucleotidesIAI46_02710 and IAI46_02715 are separated by 4 nucleotides IAI46_02695: IAI46_02695 - APC family permease, at 582,223 to 583,716 _02695 IAI46_02700: IAI46_02700 - DUF3156 family protein, at 583,691 to 584,278 _02700 IAI46_02705: IAI46_02705 - SDR family oxidoreductase, at 584,271 to 585,053 _02705 IAI46_02710: IAI46_02710 - molybdenum cofactor biosynthesis F family protein, at 585,064 to 585,861 _02710 IAI46_02715: IAI46_02715 - SDR family oxidoreductase, at 585,866 to 586,657 _02715 Position (kb) 584 585 586Strain fitness (log2 ratio) -2 -1 0 1 2at 583.332 kb on + strand, within IAI46_02695at 583.332 kb on + strand, within IAI46_02695at 583.375 kb on + strand, within IAI46_02695at 583.376 kb on - strand, within IAI46_02695at 583.438 kb on + strand, within IAI46_02695at 583.500 kb on + strand, within IAI46_02695at 583.501 kb on - strand, within IAI46_02695at 583.501 kb on - strand, within IAI46_02695at 583.504 kb on + strand, within IAI46_02695at 583.504 kb on + strand, within IAI46_02695at 583.504 kb on + strand, within IAI46_02695at 583.504 kb on + strand, within IAI46_02695at 583.504 kb on + strand, within IAI46_02695at 583.504 kb on + strand, within IAI46_02695at 583.504 kb on + strand, within IAI46_02695at 583.505 kb on - strand, within IAI46_02695at 583.505 kb on - strand, within IAI46_02695at 583.505 kb on - strand, within IAI46_02695at 583.506 kb on + strand, within IAI46_02695at 583.506 kb on + strand, within IAI46_02695at 583.506 kb on + strand, within IAI46_02695at 583.507 kb on - strand, within IAI46_02695at 583.507 kb on - strand, within IAI46_02695at 583.540 kb on + strand, within IAI46_02695at 583.540 kb on + strand, within IAI46_02695at 583.540 kb on + strand, within IAI46_02695at 583.540 kb on + strand, within IAI46_02695at 583.541 kb on - strand, within IAI46_02695at 583.541 kb on - strand, within IAI46_02695at 583.541 kb on - strand, within IAI46_02695at 583.580 kb on - strandat 583.624 kb on - strandat 583.646 kb on + strandat 583.647 kb on - strandat 583.647 kb on - strandat 583.701 kb on + strandat 583.701 kb on + strandat 583.702 kb on - strandat 583.702 kb on - strandat 583.714 kb on + strandat 583.715 kb on - strandat 583.722 kb on - strandat 583.793 kb on + strand, within IAI46_02700at 583.793 kb on + strand, within IAI46_02700at 583.794 kb on - strand, within IAI46_02700at 583.794 kb on - strand, within IAI46_02700at 583.794 kb on - strand, within IAI46_02700at 583.794 kb on - strand, within IAI46_02700at 583.885 kb on + strand, within IAI46_02700at 583.894 kb on + strand, within IAI46_02700at 583.894 kb on + strand, within IAI46_02700at 583.894 kb on + strand, within IAI46_02700at 583.894 kb on + strand, within IAI46_02700at 583.895 kb on - strand, within IAI46_02700at 583.895 kb on - strand, within IAI46_02700at 583.900 kb on + strand, within IAI46_02700at 583.953 kb on + strand, within IAI46_02700at 584.098 kb on + strand, within IAI46_02700at 584.099 kb on - strand, within IAI46_02700at 584.192 kb on + strand, within IAI46_02700at 584.277 kb on - strandat 584.277 kb on - strandat 584.277 kb on - strandat 584.360 kb on + strand, within IAI46_02705at 584.360 kb on + strand, within IAI46_02705at 584.360 kb on + strand, within IAI46_02705at 584.360 kb on + strand, within IAI46_02705at 584.361 kb on - strand, within IAI46_02705at 584.760 kb on + strand, within IAI46_02705at 584.877 kb on + strand, within IAI46_02705at 584.877 kb on + strand, within IAI46_02705at 584.878 kb on - strand, within IAI46_02705at 584.887 kb on + strand, within IAI46_02705at 584.888 kb on - strand, within IAI46_02705at 585.025 kb on + strandat 585.041 kb on + strandat 585.041 kb on + strandat 585.041 kb on + strandat 585.052 kb on - strandat 585.070 kb on - strandat 585.080 kb on + strandat 585.084 kb on + strandat 585.085 kb on - strandat 585.129 kb on + strandat 585.130 kb on - strandat 585.130 kb on - strandat 585.159 kb on + strand, within IAI46_02710at 585.173 kb on + strand, within IAI46_02710at 585.173 kb on + strand, within IAI46_02710at 585.241 kb on + strand, within IAI46_02710at 585.242 kb on - strand, within IAI46_02710at 585.257 kb on - strand, within IAI46_02710at 585.373 kb on + strand, within IAI46_02710at 585.373 kb on + strand, within IAI46_02710at 585.374 kb on - strand, within IAI46_02710at 585.534 kb on + strand, within IAI46_02710at 585.534 kb on + strand, within IAI46_02710at 585.535 kb on - strand, within IAI46_02710at 585.541 kb on + strand, within IAI46_02710at 585.541 kb on + strand, within IAI46_02710at 585.541 kb on + strand, within IAI46_02710at 585.541 kb on + strand, within IAI46_02710at 585.541 kb on + strand, within IAI46_02710at 585.541 kb on + strand, within IAI46_02710at 585.541 kb on + strand, within IAI46_02710at 585.542 kb on - strand, within IAI46_02710at 585.542 kb on - strand, within IAI46_02710at 585.542 kb on - strand, within IAI46_02710at 585.542 kb on - strand, within IAI46_02710at 585.542 kb on - strand, within IAI46_02710at 585.542 kb on - strand, within IAI46_02710at 585.542 kb on - strand, within IAI46_02710at 585.542 kb on - strand, within IAI46_02710at 585.542 kb on - strand, within IAI46_02710at 585.542 kb on - strand, within IAI46_02710at 585.542 kb on - strand, within IAI46_02710at 585.542 kb on - strand, within IAI46_02710at 585.543 kb on + strand, within IAI46_02710at 585.543 kb on + strand, within IAI46_02710at 585.543 kb on + strand, within IAI46_02710at 585.543 kb on + strand, within IAI46_02710at 585.544 kb on - strand, within IAI46_02710at 585.544 kb on - strand, within IAI46_02710at 585.547 kb on + strand, within IAI46_02710at 585.547 kb on + strand, within IAI46_02710at 585.547 kb on + strand, within IAI46_02710at 585.548 kb on - strand, within IAI46_02710at 585.548 kb on - strand, within IAI46_02710at 585.548 kb on - strand, within IAI46_02710at 585.548 kb on - strand, within IAI46_02710at 585.548 kb on - strand, within IAI46_02710at 585.565 kb on + strand, within IAI46_02710at 585.578 kb on - strand, within IAI46_02710at 585.578 kb on - strand, within IAI46_02710at 585.596 kb on - strand, within IAI46_02710at 585.655 kb on + strand, within IAI46_02710at 585.655 kb on + strand, within IAI46_02710at 585.679 kb on + strand, within IAI46_02710at 585.679 kb on + strand, within IAI46_02710at 585.680 kb on - strand, within IAI46_02710at 585.680 kb on - strand, within IAI46_02710at 585.680 kb on - strand, within IAI46_02710at 585.680 kb on - strand, within IAI46_02710at 585.859 kb on + strandat 585.859 kb on + strandat 585.860 kb on - strandat 585.878 kb on + strandat 585.878 kb on + strandat 585.878 kb on + strandat 585.878 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
remove
583,332 + IAI46_02695 0.74 -1.0
583,332 + IAI46_02695 0.74 +0.2
583,375 + IAI46_02695 0.77 -0.8
583,376 - IAI46_02695 0.77 -0.1
583,438 + IAI46_02695 0.81 -1.7
583,500 + IAI46_02695 0.85 +0.0
583,501 - IAI46_02695 0.86 +0.2
583,501 - IAI46_02695 0.86 +0.0
583,504 + IAI46_02695 0.86 +0.4
583,504 + IAI46_02695 0.86 +0.8
583,504 + IAI46_02695 0.86 -0.3
583,504 + IAI46_02695 0.86 +0.1
583,504 + IAI46_02695 0.86 -0.1
583,504 + IAI46_02695 0.86 +0.2
583,504 + IAI46_02695 0.86 +0.4
583,505 - IAI46_02695 0.86 +1.6
583,505 - IAI46_02695 0.86 +0.8
583,505 - IAI46_02695 0.86 +0.5
583,506 + IAI46_02695 0.86 +0.3
583,506 + IAI46_02695 0.86 -0.1
583,506 + IAI46_02695 0.86 +0.6
583,507 - IAI46_02695 0.86 +0.5
583,507 - IAI46_02695 0.86 -0.3
583,540 + IAI46_02695 0.88 +0.0
583,540 + IAI46_02695 0.88 +0.2
583,540 + IAI46_02695 0.88 +0.6
583,540 + IAI46_02695 0.88 +0.5
583,541 - IAI46_02695 0.88 +0.1
583,541 - IAI46_02695 0.88 -0.4
583,541 - IAI46_02695 0.88 -0.4
583,580 - -0.2
583,624 - -1.0
583,646 + -0.9
583,647 - -0.1
583,647 - +0.5
583,701 + -0.7
583,701 + +0.2
583,702 - +0.8
583,702 - -0.5
583,714 + +0.1
583,715 - -0.1
583,722 - -0.7
583,793 + IAI46_02700 0.17 +0.1
583,793 + IAI46_02700 0.17 +0.3
583,794 - IAI46_02700 0.18 +0.4
583,794 - IAI46_02700 0.18 -0.2
583,794 - IAI46_02700 0.18 +0.1
583,794 - IAI46_02700 0.18 -0.0
583,885 + IAI46_02700 0.33 +0.7
583,894 + IAI46_02700 0.35 -0.8
583,894 + IAI46_02700 0.35 +1.3
583,894 + IAI46_02700 0.35 +0.8
583,894 + IAI46_02700 0.35 -1.2
583,895 - IAI46_02700 0.35 -1.0
583,895 - IAI46_02700 0.35 -0.2
583,900 + IAI46_02700 0.36 +0.8
583,953 + IAI46_02700 0.45 -0.2
584,098 + IAI46_02700 0.69 +1.3
584,099 - IAI46_02700 0.69 -0.4
584,192 + IAI46_02700 0.85 +0.0
584,277 - -1.2
584,277 - -0.1
584,277 - -0.5
584,360 + IAI46_02705 0.11 -0.7
584,360 + IAI46_02705 0.11 +1.4
584,360 + IAI46_02705 0.11 +0.2
584,360 + IAI46_02705 0.11 -0.2
584,361 - IAI46_02705 0.11 -0.3
584,760 + IAI46_02705 0.62 +0.7
584,877 + IAI46_02705 0.77 -0.2
584,877 + IAI46_02705 0.77 +0.4
584,878 - IAI46_02705 0.78 -0.5
584,887 + IAI46_02705 0.79 +0.5
584,888 - IAI46_02705 0.79 -0.1
585,025 + -0.2
585,041 + -0.4
585,041 + -0.5
585,041 + -0.4
585,052 - +0.1
585,070 - +0.3
585,080 + +2.1
585,084 + -0.4
585,085 - +0.8
585,129 + -1.2
585,130 - +0.3
585,130 - -1.1
585,159 + IAI46_02710 0.12 +0.7
585,173 + IAI46_02710 0.14 -0.0
585,173 + IAI46_02710 0.14 -0.6
585,241 + IAI46_02710 0.22 -0.4
585,242 - IAI46_02710 0.22 +0.2
585,257 - IAI46_02710 0.24 -2.0
585,373 + IAI46_02710 0.39 -0.8
585,373 + IAI46_02710 0.39 -0.1
585,374 - IAI46_02710 0.39 -0.1
585,534 + IAI46_02710 0.59 +0.3
585,534 + IAI46_02710 0.59 +0.0
585,535 - IAI46_02710 0.59 -0.1
585,541 + IAI46_02710 0.60 -0.5
585,541 + IAI46_02710 0.60 +0.5
585,541 + IAI46_02710 0.60 -0.5
585,541 + IAI46_02710 0.60 -1.5
585,541 + IAI46_02710 0.60 -1.0
585,541 + IAI46_02710 0.60 +0.6
585,541 + IAI46_02710 0.60 +0.6
585,542 - IAI46_02710 0.60 +1.3
585,542 - IAI46_02710 0.60 +0.7
585,542 - IAI46_02710 0.60 -0.0
585,542 - IAI46_02710 0.60 -0.5
585,542 - IAI46_02710 0.60 +0.3
585,542 - IAI46_02710 0.60 +1.1
585,542 - IAI46_02710 0.60 +0.7
585,542 - IAI46_02710 0.60 +0.1
585,542 - IAI46_02710 0.60 -0.8
585,542 - IAI46_02710 0.60 +0.5
585,542 - IAI46_02710 0.60 +1.1
585,542 - IAI46_02710 0.60 +0.2
585,543 + IAI46_02710 0.60 +0.1
585,543 + IAI46_02710 0.60 -0.5
585,543 + IAI46_02710 0.60 -0.5
585,543 + IAI46_02710 0.60 -0.2
585,544 - IAI46_02710 0.60 +0.2
585,544 - IAI46_02710 0.60 +0.5
585,547 + IAI46_02710 0.61 +0.5
585,547 + IAI46_02710 0.61 +0.9
585,547 + IAI46_02710 0.61 +0.5
585,548 - IAI46_02710 0.61 +0.3
585,548 - IAI46_02710 0.61 -1.6
585,548 - IAI46_02710 0.61 +0.3
585,548 - IAI46_02710 0.61 +1.5
585,548 - IAI46_02710 0.61 -0.7
585,565 + IAI46_02710 0.63 +1.5
585,578 - IAI46_02710 0.64 -0.7
585,578 - IAI46_02710 0.64 +0.2
585,596 - IAI46_02710 0.67 +0.9
585,655 + IAI46_02710 0.74 +0.2
585,655 + IAI46_02710 0.74 -0.3
585,679 + IAI46_02710 0.77 -0.8
585,679 + IAI46_02710 0.77 +0.4
585,680 - IAI46_02710 0.77 +0.6
585,680 - IAI46_02710 0.77 +0.8
585,680 - IAI46_02710 0.77 +0.3
585,680 - IAI46_02710 0.77 +0.2
585,859 + -0.2
585,859 + -0.2
585,860 - +0.5
585,878 + +0.8
585,878 + +0.5
585,878 + +0.0
585,878 + +1.0

Or see this region's nucleotide sequence