Strain Fitness in Serratia liquefaciens MT49 around IAI46_01665

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01660 and IAI46_01665 are separated by 59 nucleotidesIAI46_01665 and IAI46_01670 are separated by 129 nucleotides IAI46_01660: IAI46_01660 - ribonuclease R, at 363,384 to 365,870 _01660 IAI46_01665: IAI46_01665 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 365,930 to 366,661 _01665 IAI46_01670: IAI46_01670 - isovaleryl-CoA dehydrogenase, at 366,791 to 368,422 _01670 Position (kb) 365 366 367Strain fitness (log2 ratio) -2 -1 0 1at 364.938 kb on + strand, within IAI46_01660at 364.938 kb on + strand, within IAI46_01660at 364.938 kb on + strand, within IAI46_01660at 365.070 kb on + strand, within IAI46_01660at 365.070 kb on + strand, within IAI46_01660at 365.070 kb on + strand, within IAI46_01660at 365.133 kb on + strand, within IAI46_01660at 365.300 kb on + strand, within IAI46_01660at 365.407 kb on + strand, within IAI46_01660at 365.407 kb on + strand, within IAI46_01660at 365.408 kb on - strand, within IAI46_01660at 365.408 kb on - strand, within IAI46_01660at 365.408 kb on - strand, within IAI46_01660at 365.427 kb on + strand, within IAI46_01660at 365.427 kb on + strand, within IAI46_01660at 365.427 kb on + strand, within IAI46_01660at 365.428 kb on - strand, within IAI46_01660at 365.428 kb on - strand, within IAI46_01660at 365.428 kb on - strand, within IAI46_01660at 365.428 kb on - strand, within IAI46_01660at 365.442 kb on - strand, within IAI46_01660at 365.442 kb on - strand, within IAI46_01660at 365.504 kb on - strand, within IAI46_01660at 365.528 kb on + strand, within IAI46_01660at 365.528 kb on + strand, within IAI46_01660at 365.529 kb on - strand, within IAI46_01660at 365.529 kb on - strand, within IAI46_01660at 365.868 kb on + strandat 365.887 kb on - strandat 365.887 kb on - strandat 365.887 kb on - strandat 365.917 kb on + strandat 365.918 kb on - strandat 365.942 kb on - strandat 365.946 kb on - strandat 365.950 kb on + strandat 365.973 kb on + strandat 365.973 kb on + strandat 366.007 kb on + strand, within IAI46_01665at 366.007 kb on + strand, within IAI46_01665at 366.037 kb on - strand, within IAI46_01665at 366.250 kb on + strand, within IAI46_01665at 366.532 kb on + strand, within IAI46_01665at 366.532 kb on + strand, within IAI46_01665at 366.532 kb on + strand, within IAI46_01665at 366.532 kb on + strand, within IAI46_01665at 366.533 kb on - strand, within IAI46_01665at 366.533 kb on - strand, within IAI46_01665at 366.533 kb on - strand, within IAI46_01665at 366.533 kb on - strand, within IAI46_01665at 366.625 kb on + strandat 366.626 kb on - strandat 366.665 kb on - strandat 366.665 kb on - strandat 366.671 kb on - strandat 366.693 kb on + strandat 366.693 kb on + strandat 366.694 kb on - strandat 366.712 kb on + strandat 366.713 kb on - strandat 366.755 kb on + strandat 366.755 kb on + strandat 366.755 kb on + strandat 366.755 kb on + strandat 366.759 kb on + strandat 366.760 kb on - strandat 366.760 kb on - strandat 366.775 kb on - strandat 366.775 kb on - strandat 366.802 kb on + strandat 366.802 kb on + strandat 366.803 kb on - strandat 366.803 kb on - strandat 366.817 kb on + strandat 366.844 kb on + strandat 366.844 kb on + strandat 366.844 kb on + strandat 366.845 kb on - strandat 367.156 kb on - strand, within IAI46_01670at 367.156 kb on - strand, within IAI46_01670at 367.158 kb on + strand, within IAI46_01670at 367.159 kb on - strand, within IAI46_01670at 367.159 kb on - strand, within IAI46_01670at 367.283 kb on + strand, within IAI46_01670at 367.376 kb on - strand, within IAI46_01670at 367.376 kb on - strand, within IAI46_01670at 367.378 kb on + strand, within IAI46_01670at 367.378 kb on + strand, within IAI46_01670at 367.557 kb on + strand, within IAI46_01670at 367.557 kb on + strand, within IAI46_01670at 367.558 kb on - strand, within IAI46_01670at 367.579 kb on + strand, within IAI46_01670at 367.579 kb on + strand, within IAI46_01670at 367.579 kb on + strand, within IAI46_01670at 367.580 kb on - strand, within IAI46_01670

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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364,938 + IAI46_01660 0.62 -0.4
364,938 + IAI46_01660 0.62 +1.3
364,938 + IAI46_01660 0.62 -0.5
365,070 + IAI46_01660 0.68 +0.0
365,070 + IAI46_01660 0.68 +0.7
365,070 + IAI46_01660 0.68 -0.9
365,133 + IAI46_01660 0.70 -0.1
365,300 + IAI46_01660 0.77 +0.8
365,407 + IAI46_01660 0.81 +0.2
365,407 + IAI46_01660 0.81 +0.3
365,408 - IAI46_01660 0.81 +0.6
365,408 - IAI46_01660 0.81 -0.3
365,408 - IAI46_01660 0.81 -0.4
365,427 + IAI46_01660 0.82 -0.1
365,427 + IAI46_01660 0.82 -0.0
365,427 + IAI46_01660 0.82 +1.1
365,428 - IAI46_01660 0.82 +0.0
365,428 - IAI46_01660 0.82 -0.6
365,428 - IAI46_01660 0.82 -0.3
365,428 - IAI46_01660 0.82 -1.1
365,442 - IAI46_01660 0.83 -1.4
365,442 - IAI46_01660 0.83 +0.4
365,504 - IAI46_01660 0.85 -0.1
365,528 + IAI46_01660 0.86 -0.0
365,528 + IAI46_01660 0.86 -0.1
365,529 - IAI46_01660 0.86 -0.1
365,529 - IAI46_01660 0.86 -0.5
365,868 + +1.1
365,887 - +0.4
365,887 - +0.3
365,887 - -0.4
365,917 + +1.1
365,918 - -0.2
365,942 - +0.4
365,946 - -0.6
365,950 + +0.0
365,973 + +0.0
365,973 + +0.3
366,007 + IAI46_01665 0.11 -1.3
366,007 + IAI46_01665 0.11 +0.9
366,037 - IAI46_01665 0.15 +0.9
366,250 + IAI46_01665 0.44 +0.8
366,532 + IAI46_01665 0.82 +0.2
366,532 + IAI46_01665 0.82 -0.9
366,532 + IAI46_01665 0.82 -0.4
366,532 + IAI46_01665 0.82 -0.2
366,533 - IAI46_01665 0.82 -0.1
366,533 - IAI46_01665 0.82 -0.4
366,533 - IAI46_01665 0.82 -1.4
366,533 - IAI46_01665 0.82 -0.8
366,625 + +0.1
366,626 - -0.2
366,665 - +0.8
366,665 - -2.0
366,671 - +0.9
366,693 + +0.5
366,693 + +0.6
366,694 - +1.1
366,712 + -0.9
366,713 - +0.1
366,755 + -1.3
366,755 + -0.1
366,755 + +0.5
366,755 + +0.7
366,759 + -1.4
366,760 - -0.7
366,760 - +0.4
366,775 - -0.0
366,775 - +0.7
366,802 + -1.4
366,802 + +0.3
366,803 - +0.8
366,803 - +1.4
366,817 + -0.3
366,844 + +0.4
366,844 + -0.1
366,844 + +0.2
366,845 - +0.4
367,156 - IAI46_01670 0.22 +0.3
367,156 - IAI46_01670 0.22 +0.2
367,158 + IAI46_01670 0.22 -0.2
367,159 - IAI46_01670 0.23 -0.8
367,159 - IAI46_01670 0.23 +0.9
367,283 + IAI46_01670 0.30 +0.6
367,376 - IAI46_01670 0.36 -0.4
367,376 - IAI46_01670 0.36 +0.3
367,378 + IAI46_01670 0.36 +0.4
367,378 + IAI46_01670 0.36 +1.1
367,557 + IAI46_01670 0.47 -0.3
367,557 + IAI46_01670 0.47 +0.4
367,558 - IAI46_01670 0.47 -0.5
367,579 + IAI46_01670 0.48 -0.6
367,579 + IAI46_01670 0.48 +0.4
367,579 + IAI46_01670 0.48 -0.6
367,580 - IAI46_01670 0.48 -0.6

Or see this region's nucleotide sequence