Strain Fitness in Serratia liquefaciens MT49 around IAI46_01605

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01600 and IAI46_01605 are separated by 14 nucleotidesIAI46_01605 and IAI46_01610 are separated by 7 nucleotides IAI46_01600: IAI46_01600 - bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase, at 349,965 to 351,476 _01600 IAI46_01605: IAI46_01605 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE, at 351,491 to 351,961 _01605 IAI46_01610: IAI46_01610 - N-acetylmuramoyl-L-alanine amidase AmiB, at 351,969 to 353,765 _01610 Position (kb) 351 352Strain fitness (log2 ratio) -2 -1 0 1 2at 350.531 kb on + strand, within IAI46_01600at 350.531 kb on + strand, within IAI46_01600at 350.531 kb on + strand, within IAI46_01600at 350.532 kb on - strand, within IAI46_01600at 350.532 kb on - strand, within IAI46_01600at 350.609 kb on + strand, within IAI46_01600at 350.610 kb on - strand, within IAI46_01600at 350.610 kb on - strand, within IAI46_01600at 350.610 kb on - strand, within IAI46_01600at 350.615 kb on - strand, within IAI46_01600at 350.715 kb on - strand, within IAI46_01600at 350.715 kb on - strand, within IAI46_01600at 350.990 kb on - strand, within IAI46_01600at 351.006 kb on - strand, within IAI46_01600at 351.040 kb on + strand, within IAI46_01600at 351.040 kb on + strand, within IAI46_01600at 351.041 kb on - strand, within IAI46_01600at 351.049 kb on + strand, within IAI46_01600at 351.049 kb on + strand, within IAI46_01600at 351.148 kb on + strand, within IAI46_01600at 351.162 kb on - strand, within IAI46_01600at 351.177 kb on + strand, within IAI46_01600at 351.177 kb on + strand, within IAI46_01600at 351.177 kb on + strand, within IAI46_01600at 351.210 kb on - strand, within IAI46_01600at 351.339 kb on + strandat 351.339 kb on + strandat 351.339 kb on + strandat 351.339 kb on + strandat 351.339 kb on + strandat 351.339 kb on + strandat 351.340 kb on - strandat 351.409 kb on + strandat 351.433 kb on + strandat 351.450 kb on + strandat 351.453 kb on + strandat 351.453 kb on + strandat 351.453 kb on + strandat 351.453 kb on + strandat 351.453 kb on + strandat 351.453 kb on + strandat 351.453 kb on + strandat 351.453 kb on + strandat 351.453 kb on + strandat 351.474 kb on + strandat 351.478 kb on + strandat 351.940 kb on + strandat 351.940 kb on + strandat 351.975 kb on + strandat 351.975 kb on + strandat 351.975 kb on + strandat 351.975 kb on + strandat 351.976 kb on - strandat 351.976 kb on - strandat 351.976 kb on - strandat 351.976 kb on - strandat 351.976 kb on - strandat 351.976 kb on - strandat 351.976 kb on - strandat 351.992 kb on - strandat 351.997 kb on + strandat 352.070 kb on + strandat 352.071 kb on - strandat 352.115 kb on + strandat 352.131 kb on + strandat 352.168 kb on + strand, within IAI46_01610at 352.276 kb on + strand, within IAI46_01610at 352.276 kb on + strand, within IAI46_01610at 352.277 kb on - strand, within IAI46_01610at 352.344 kb on + strand, within IAI46_01610at 352.345 kb on - strand, within IAI46_01610at 352.345 kb on - strand, within IAI46_01610at 352.347 kb on - strand, within IAI46_01610at 352.388 kb on + strand, within IAI46_01610at 352.388 kb on + strand, within IAI46_01610at 352.388 kb on + strand, within IAI46_01610at 352.389 kb on - strand, within IAI46_01610at 352.389 kb on - strand, within IAI46_01610at 352.393 kb on + strand, within IAI46_01610at 352.393 kb on + strand, within IAI46_01610at 352.443 kb on - strand, within IAI46_01610at 352.443 kb on - strand, within IAI46_01610at 352.526 kb on + strand, within IAI46_01610at 352.532 kb on + strand, within IAI46_01610at 352.688 kb on + strand, within IAI46_01610at 352.689 kb on - strand, within IAI46_01610at 352.689 kb on - strand, within IAI46_01610at 352.767 kb on + strand, within IAI46_01610at 352.768 kb on - strand, within IAI46_01610

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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350,531 + IAI46_01600 0.37 +0.3
350,531 + IAI46_01600 0.37 -0.2
350,531 + IAI46_01600 0.37 +0.9
350,532 - IAI46_01600 0.38 -0.4
350,532 - IAI46_01600 0.38 +0.5
350,609 + IAI46_01600 0.43 -0.4
350,610 - IAI46_01600 0.43 +0.1
350,610 - IAI46_01600 0.43 +0.8
350,610 - IAI46_01600 0.43 +0.3
350,615 - IAI46_01600 0.43 +0.2
350,715 - IAI46_01600 0.50 +0.7
350,715 - IAI46_01600 0.50 +0.6
350,990 - IAI46_01600 0.68 +0.5
351,006 - IAI46_01600 0.69 -0.6
351,040 + IAI46_01600 0.71 +0.8
351,040 + IAI46_01600 0.71 -0.4
351,041 - IAI46_01600 0.71 +0.4
351,049 + IAI46_01600 0.72 +0.8
351,049 + IAI46_01600 0.72 +0.2
351,148 + IAI46_01600 0.78 -0.3
351,162 - IAI46_01600 0.79 -0.3
351,177 + IAI46_01600 0.80 -0.1
351,177 + IAI46_01600 0.80 +1.4
351,177 + IAI46_01600 0.80 +0.4
351,210 - IAI46_01600 0.82 +0.5
351,339 + +0.1
351,339 + +1.2
351,339 + +0.0
351,339 + -0.3
351,339 + +1.1
351,339 + +0.3
351,340 - -1.8
351,409 + +0.2
351,433 + +0.4
351,450 + +0.7
351,453 + +1.0
351,453 + -0.2
351,453 + -0.5
351,453 + +0.8
351,453 + +1.5
351,453 + +0.1
351,453 + +0.2
351,453 + +0.4
351,453 + -1.2
351,474 + +1.1
351,478 + -0.4
351,940 + +2.2
351,940 + +0.6
351,975 + -0.7
351,975 + -0.9
351,975 + -0.3
351,975 + -0.3
351,976 - +1.1
351,976 - -0.1
351,976 - -0.7
351,976 - +0.1
351,976 - +0.2
351,976 - -1.0
351,976 - +0.2
351,992 - -0.8
351,997 + -0.2
352,070 + -0.8
352,071 - -0.6
352,115 + +0.1
352,131 + -0.9
352,168 + IAI46_01610 0.11 -0.4
352,276 + IAI46_01610 0.17 +0.0
352,276 + IAI46_01610 0.17 -1.8
352,277 - IAI46_01610 0.17 +1.0
352,344 + IAI46_01610 0.21 -1.0
352,345 - IAI46_01610 0.21 -1.0
352,345 - IAI46_01610 0.21 -0.7
352,347 - IAI46_01610 0.21 -0.6
352,388 + IAI46_01610 0.23 -0.5
352,388 + IAI46_01610 0.23 -0.5
352,388 + IAI46_01610 0.23 -1.0
352,389 - IAI46_01610 0.23 +0.1
352,389 - IAI46_01610 0.23 +0.2
352,393 + IAI46_01610 0.24 -0.5
352,393 + IAI46_01610 0.24 -0.2
352,443 - IAI46_01610 0.26 -0.5
352,443 - IAI46_01610 0.26 +0.3
352,526 + IAI46_01610 0.31 -0.4
352,532 + IAI46_01610 0.31 -0.5
352,688 + IAI46_01610 0.40 -0.3
352,689 - IAI46_01610 0.40 -0.2
352,689 - IAI46_01610 0.40 -1.0
352,767 + IAI46_01610 0.44 +0.1
352,768 - IAI46_01610 0.44 -1.5

Or see this region's nucleotide sequence