Strain Fitness in Serratia liquefaciens MT49 around IAI46_01425

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01415 and IAI46_01420 are separated by 210 nucleotidesIAI46_01420 and IAI46_01425 are separated by 79 nucleotidesIAI46_01425 and IAI46_01430 are separated by 141 nucleotidesIAI46_01430 and IAI46_01435 are separated by 12 nucleotides IAI46_01415: IAI46_01415 - peptidoglycan DD-metalloendopeptidase family protein, at 312,216 to 312,965 _01415 IAI46_01420: IAI46_01420 - DUF2238 domain-containing protein, at 313,176 to 313,799 _01420 IAI46_01425: IAI46_01425 - sulfite exporter TauE/SafE family protein, at 313,879 to 314,625 _01425 IAI46_01430: IAI46_01430 - molecular chaperone TorD, at 314,767 to 315,408 _01430 IAI46_01435: IAI46_01435 - trimethylamine-N-oxide reductase TorA, at 315,421 to 317,955 _01435 Position (kb) 313 314 315Strain fitness (log2 ratio) -2 -1 0 1 2at 312.921 kb on + strandat 312.922 kb on - strandat 312.945 kb on + strandat 312.946 kb on - strandat 312.973 kb on + strandat 312.974 kb on - strandat 312.974 kb on - strandat 312.974 kb on - strandat 312.983 kb on - strandat 312.999 kb on - strandat 313.001 kb on + strandat 313.001 kb on + strandat 313.001 kb on + strandat 313.001 kb on + strandat 313.001 kb on + strandat 313.002 kb on - strandat 313.002 kb on - strandat 313.002 kb on - strandat 313.005 kb on + strandat 313.006 kb on - strandat 313.006 kb on - strandat 313.006 kb on - strandat 313.006 kb on - strandat 313.007 kb on - strandat 313.021 kb on - strandat 313.021 kb on - strandat 313.036 kb on + strandat 313.036 kb on + strandat 313.049 kb on - strandat 313.049 kb on - strandat 313.050 kb on + strandat 313.050 kb on + strandat 313.054 kb on - strandat 313.067 kb on - strandat 313.112 kb on - strandat 313.135 kb on + strandat 313.136 kb on - strandat 313.136 kb on - strandat 313.137 kb on + strandat 313.138 kb on - strandat 313.140 kb on + strandat 313.141 kb on - strandat 313.202 kb on - strandat 313.242 kb on + strand, within IAI46_01420at 313.242 kb on + strand, within IAI46_01420at 313.244 kb on + strand, within IAI46_01420at 313.261 kb on - strand, within IAI46_01420at 313.261 kb on - strand, within IAI46_01420at 313.304 kb on - strand, within IAI46_01420at 313.403 kb on + strand, within IAI46_01420at 313.403 kb on + strand, within IAI46_01420at 313.403 kb on + strand, within IAI46_01420at 313.403 kb on + strand, within IAI46_01420at 313.404 kb on - strand, within IAI46_01420at 313.407 kb on + strand, within IAI46_01420at 313.407 kb on + strand, within IAI46_01420at 313.407 kb on + strand, within IAI46_01420at 313.407 kb on + strand, within IAI46_01420at 313.407 kb on + strand, within IAI46_01420at 313.407 kb on + strand, within IAI46_01420at 313.407 kb on + strand, within IAI46_01420at 313.407 kb on + strand, within IAI46_01420at 313.407 kb on + strand, within IAI46_01420at 313.407 kb on + strand, within IAI46_01420at 313.407 kb on + strand, within IAI46_01420at 313.407 kb on + strand, within IAI46_01420at 313.407 kb on + strand, within IAI46_01420at 313.407 kb on + strand, within IAI46_01420at 313.407 kb on + strand, within IAI46_01420at 313.407 kb on + strand, within IAI46_01420at 313.407 kb on + strand, within IAI46_01420at 313.407 kb on + strand, within IAI46_01420at 313.407 kb on + strand, within IAI46_01420at 313.408 kb on - strand, within IAI46_01420at 313.408 kb on - strand, within IAI46_01420at 313.408 kb on - strand, within IAI46_01420at 313.408 kb on - strand, within IAI46_01420at 313.408 kb on - strand, within IAI46_01420at 313.408 kb on - strand, within IAI46_01420at 313.408 kb on - strand, within IAI46_01420at 313.408 kb on - strand, within IAI46_01420at 313.408 kb on - strand, within IAI46_01420at 313.408 kb on - strand, within IAI46_01420at 313.408 kb on - strand, within IAI46_01420at 313.408 kb on - strand, within IAI46_01420at 313.408 kb on - strand, within IAI46_01420at 313.409 kb on + strand, within IAI46_01420at 313.409 kb on + strand, within IAI46_01420at 313.409 kb on + strand, within IAI46_01420at 313.410 kb on - strand, within IAI46_01420at 313.410 kb on - strand, within IAI46_01420at 313.413 kb on + strand, within IAI46_01420at 313.413 kb on + strand, within IAI46_01420at 313.413 kb on + strand, within IAI46_01420at 313.413 kb on + strand, within IAI46_01420at 313.413 kb on + strand, within IAI46_01420at 313.413 kb on + strand, within IAI46_01420at 313.413 kb on + strand, within IAI46_01420at 313.413 kb on + strand, within IAI46_01420at 313.413 kb on + strand, within IAI46_01420at 313.413 kb on + strand, within IAI46_01420at 313.413 kb on + strand, within IAI46_01420at 313.414 kb on - strand, within IAI46_01420at 313.414 kb on - strand, within IAI46_01420at 313.438 kb on - strand, within IAI46_01420at 313.451 kb on - strand, within IAI46_01420at 313.466 kb on + strand, within IAI46_01420at 313.466 kb on + strand, within IAI46_01420at 313.473 kb on + strand, within IAI46_01420at 313.478 kb on + strand, within IAI46_01420at 313.478 kb on + strand, within IAI46_01420at 313.549 kb on - strand, within IAI46_01420at 313.549 kb on - strand, within IAI46_01420at 313.549 kb on - strand, within IAI46_01420at 313.786 kb on + strandat 313.797 kb on + strandat 313.819 kb on + strandat 313.819 kb on + strandat 313.819 kb on + strandat 313.820 kb on - strandat 313.827 kb on + strandat 313.835 kb on - strandat 313.864 kb on + strandat 313.879 kb on - strandat 313.906 kb on + strandat 313.907 kb on - strandat 313.907 kb on - strandat 313.907 kb on - strandat 313.907 kb on - strandat 313.939 kb on + strandat 313.940 kb on - strandat 314.002 kb on + strand, within IAI46_01425at 314.003 kb on - strand, within IAI46_01425at 314.004 kb on + strand, within IAI46_01425at 314.004 kb on + strand, within IAI46_01425at 314.004 kb on + strand, within IAI46_01425at 314.004 kb on + strand, within IAI46_01425at 314.215 kb on + strand, within IAI46_01425at 314.215 kb on + strand, within IAI46_01425at 314.215 kb on + strand, within IAI46_01425at 314.215 kb on + strand, within IAI46_01425at 314.216 kb on - strand, within IAI46_01425at 314.216 kb on - strand, within IAI46_01425at 314.216 kb on - strand, within IAI46_01425at 314.216 kb on - strand, within IAI46_01425at 314.216 kb on - strand, within IAI46_01425at 314.225 kb on - strand, within IAI46_01425at 314.312 kb on + strand, within IAI46_01425at 314.331 kb on + strand, within IAI46_01425at 314.332 kb on - strand, within IAI46_01425at 314.332 kb on - strand, within IAI46_01425at 314.332 kb on - strand, within IAI46_01425at 314.335 kb on + strand, within IAI46_01425at 314.335 kb on + strand, within IAI46_01425at 314.335 kb on + strand, within IAI46_01425at 314.335 kb on + strand, within IAI46_01425at 314.335 kb on + strand, within IAI46_01425at 314.335 kb on + strand, within IAI46_01425at 314.335 kb on + strand, within IAI46_01425at 314.335 kb on + strand, within IAI46_01425at 314.336 kb on - strand, within IAI46_01425at 314.336 kb on - strand, within IAI46_01425at 314.336 kb on - strand, within IAI46_01425at 314.336 kb on - strand, within IAI46_01425at 314.336 kb on - strand, within IAI46_01425at 314.344 kb on + strand, within IAI46_01425at 314.345 kb on - strand, within IAI46_01425at 314.345 kb on - strand, within IAI46_01425at 314.358 kb on + strand, within IAI46_01425at 314.359 kb on - strand, within IAI46_01425at 314.359 kb on - strand, within IAI46_01425at 314.412 kb on + strand, within IAI46_01425at 314.413 kb on - strand, within IAI46_01425at 314.413 kb on - strand, within IAI46_01425at 314.413 kb on - strand, within IAI46_01425at 314.413 kb on - strand, within IAI46_01425at 314.452 kb on + strand, within IAI46_01425at 314.453 kb on - strand, within IAI46_01425at 314.468 kb on + strand, within IAI46_01425at 314.469 kb on - strand, within IAI46_01425at 314.469 kb on - strand, within IAI46_01425at 314.475 kb on - strand, within IAI46_01425at 314.515 kb on - strand, within IAI46_01425at 314.515 kb on - strand, within IAI46_01425at 314.567 kb on + strandat 314.567 kb on + strandat 314.610 kb on + strandat 314.611 kb on - strandat 314.614 kb on + strandat 314.682 kb on - strandat 314.708 kb on + strandat 314.746 kb on + strandat 314.746 kb on + strandat 314.755 kb on + strandat 314.813 kb on - strandat 314.831 kb on + strandat 314.831 kb on + strandat 314.953 kb on + strand, within IAI46_01430at 314.974 kb on + strand, within IAI46_01430at 314.974 kb on + strand, within IAI46_01430at 314.974 kb on + strand, within IAI46_01430at 314.975 kb on - strand, within IAI46_01430at 314.975 kb on - strand, within IAI46_01430at 314.995 kb on + strand, within IAI46_01430at 314.996 kb on - strand, within IAI46_01430at 315.084 kb on + strand, within IAI46_01430at 315.107 kb on + strand, within IAI46_01430at 315.108 kb on - strand, within IAI46_01430at 315.108 kb on - strand, within IAI46_01430at 315.120 kb on - strand, within IAI46_01430at 315.269 kb on - strand, within IAI46_01430at 315.324 kb on + strand, within IAI46_01430at 315.359 kb on + strandat 315.359 kb on + strandat 315.360 kb on - strandat 315.360 kb on - strandat 315.360 kb on - strandat 315.371 kb on + strandat 315.371 kb on + strandat 315.372 kb on - strandat 315.396 kb on + strandat 315.455 kb on + strandat 315.455 kb on + strandat 315.520 kb on - strandat 315.520 kb on - strandat 315.598 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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312,921 + -0.4
312,922 - -0.5
312,945 + -0.6
312,946 - -0.2
312,973 + +0.3
312,974 - -0.5
312,974 - +2.2
312,974 - +0.1
312,983 - -0.4
312,999 - -0.0
313,001 + +0.2
313,001 + -0.7
313,001 + +0.0
313,001 + +0.2
313,001 + +0.2
313,002 - +0.4
313,002 - +0.3
313,002 - +0.3
313,005 + -0.8
313,006 - -1.3
313,006 - +0.1
313,006 - -1.5
313,006 - +0.2
313,007 - +1.0
313,021 - +0.3
313,021 - -0.2
313,036 + +0.9
313,036 + +1.4
313,049 - +0.5
313,049 - +0.6
313,050 + -0.0
313,050 + -0.7
313,054 - -0.0
313,067 - +0.7
313,112 - -0.3
313,135 + -0.5
313,136 - +0.7
313,136 - +0.4
313,137 + -0.3
313,138 - +1.3
313,140 + -1.0
313,141 - +1.8
313,202 - +0.2
313,242 + IAI46_01420 0.11 -0.1
313,242 + IAI46_01420 0.11 +0.9
313,244 + IAI46_01420 0.11 +0.6
313,261 - IAI46_01420 0.14 +0.7
313,261 - IAI46_01420 0.14 +1.3
313,304 - IAI46_01420 0.21 -0.3
313,403 + IAI46_01420 0.36 +0.6
313,403 + IAI46_01420 0.36 -1.3
313,403 + IAI46_01420 0.36 -0.1
313,403 + IAI46_01420 0.36 -0.4
313,404 - IAI46_01420 0.37 -0.7
313,407 + IAI46_01420 0.37 +1.0
313,407 + IAI46_01420 0.37 +0.2
313,407 + IAI46_01420 0.37 +0.4
313,407 + IAI46_01420 0.37 -1.9
313,407 + IAI46_01420 0.37 +0.1
313,407 + IAI46_01420 0.37 +0.4
313,407 + IAI46_01420 0.37 +1.3
313,407 + IAI46_01420 0.37 +0.0
313,407 + IAI46_01420 0.37 -0.6
313,407 + IAI46_01420 0.37 +0.3
313,407 + IAI46_01420 0.37 -0.2
313,407 + IAI46_01420 0.37 +0.5
313,407 + IAI46_01420 0.37 -0.5
313,407 + IAI46_01420 0.37 +0.7
313,407 + IAI46_01420 0.37 -0.1
313,407 + IAI46_01420 0.37 -0.2
313,407 + IAI46_01420 0.37 +0.7
313,407 + IAI46_01420 0.37 -0.4
313,407 + IAI46_01420 0.37 -1.7
313,408 - IAI46_01420 0.37 -0.3
313,408 - IAI46_01420 0.37 +1.0
313,408 - IAI46_01420 0.37 +0.6
313,408 - IAI46_01420 0.37 +0.6
313,408 - IAI46_01420 0.37 +0.9
313,408 - IAI46_01420 0.37 +2.1
313,408 - IAI46_01420 0.37 +0.3
313,408 - IAI46_01420 0.37 -1.1
313,408 - IAI46_01420 0.37 -0.2
313,408 - IAI46_01420 0.37 +1.3
313,408 - IAI46_01420 0.37 +0.9
313,408 - IAI46_01420 0.37 +0.0
313,408 - IAI46_01420 0.37 +0.1
313,409 + IAI46_01420 0.37 +0.6
313,409 + IAI46_01420 0.37 +0.2
313,409 + IAI46_01420 0.37 -0.9
313,410 - IAI46_01420 0.38 +0.8
313,410 - IAI46_01420 0.38 -0.2
313,413 + IAI46_01420 0.38 -0.6
313,413 + IAI46_01420 0.38 -0.4
313,413 + IAI46_01420 0.38 +0.5
313,413 + IAI46_01420 0.38 +0.7
313,413 + IAI46_01420 0.38 -0.8
313,413 + IAI46_01420 0.38 -0.0
313,413 + IAI46_01420 0.38 +0.5
313,413 + IAI46_01420 0.38 -0.1
313,413 + IAI46_01420 0.38 -1.2
313,413 + IAI46_01420 0.38 -0.3
313,413 + IAI46_01420 0.38 +0.3
313,414 - IAI46_01420 0.38 +0.2
313,414 - IAI46_01420 0.38 +0.4
313,438 - IAI46_01420 0.42 -1.5
313,451 - IAI46_01420 0.44 +0.4
313,466 + IAI46_01420 0.46 +0.8
313,466 + IAI46_01420 0.46 +0.6
313,473 + IAI46_01420 0.48 +0.5
313,478 + IAI46_01420 0.48 -0.1
313,478 + IAI46_01420 0.48 +0.0
313,549 - IAI46_01420 0.60 -0.2
313,549 - IAI46_01420 0.60 +1.2
313,549 - IAI46_01420 0.60 +0.9
313,786 + -0.1
313,797 + -0.5
313,819 + -0.7
313,819 + -0.0
313,819 + +0.2
313,820 - +0.4
313,827 + +0.2
313,835 - +0.1
313,864 + +0.2
313,879 - -0.4
313,906 + -0.1
313,907 - -0.2
313,907 - -1.2
313,907 - -0.1
313,907 - +0.4
313,939 + +0.4
313,940 - -0.2
314,002 + IAI46_01425 0.16 -0.7
314,003 - IAI46_01425 0.17 +1.4
314,004 + IAI46_01425 0.17 +0.2
314,004 + IAI46_01425 0.17 +0.5
314,004 + IAI46_01425 0.17 -0.3
314,004 + IAI46_01425 0.17 -0.1
314,215 + IAI46_01425 0.45 +0.9
314,215 + IAI46_01425 0.45 -0.2
314,215 + IAI46_01425 0.45 -0.3
314,215 + IAI46_01425 0.45 +1.3
314,216 - IAI46_01425 0.45 -0.4
314,216 - IAI46_01425 0.45 -0.1
314,216 - IAI46_01425 0.45 -1.5
314,216 - IAI46_01425 0.45 +0.8
314,216 - IAI46_01425 0.45 -0.9
314,225 - IAI46_01425 0.46 +0.4
314,312 + IAI46_01425 0.58 +0.7
314,331 + IAI46_01425 0.61 +0.7
314,332 - IAI46_01425 0.61 -1.4
314,332 - IAI46_01425 0.61 -0.5
314,332 - IAI46_01425 0.61 +0.2
314,335 + IAI46_01425 0.61 -0.6
314,335 + IAI46_01425 0.61 +0.2
314,335 + IAI46_01425 0.61 +0.8
314,335 + IAI46_01425 0.61 +0.9
314,335 + IAI46_01425 0.61 -0.3
314,335 + IAI46_01425 0.61 +0.0
314,335 + IAI46_01425 0.61 -0.1
314,335 + IAI46_01425 0.61 -1.1
314,336 - IAI46_01425 0.61 -0.2
314,336 - IAI46_01425 0.61 +0.9
314,336 - IAI46_01425 0.61 -0.2
314,336 - IAI46_01425 0.61 -0.2
314,336 - IAI46_01425 0.61 +1.7
314,344 + IAI46_01425 0.62 -0.8
314,345 - IAI46_01425 0.62 +0.4
314,345 - IAI46_01425 0.62 +0.6
314,358 + IAI46_01425 0.64 -0.2
314,359 - IAI46_01425 0.64 -0.3
314,359 - IAI46_01425 0.64 +0.1
314,412 + IAI46_01425 0.71 -0.9
314,413 - IAI46_01425 0.71 -0.5
314,413 - IAI46_01425 0.71 +2.0
314,413 - IAI46_01425 0.71 +0.2
314,413 - IAI46_01425 0.71 +1.2
314,452 + IAI46_01425 0.77 -0.3
314,453 - IAI46_01425 0.77 +0.1
314,468 + IAI46_01425 0.79 +0.3
314,469 - IAI46_01425 0.79 +0.5
314,469 - IAI46_01425 0.79 -0.1
314,475 - IAI46_01425 0.80 -0.3
314,515 - IAI46_01425 0.85 +0.4
314,515 - IAI46_01425 0.85 +0.8
314,567 + -0.6
314,567 + +0.6
314,610 + +0.7
314,611 - -0.2
314,614 + -1.2
314,682 - -0.1
314,708 + +1.6
314,746 + +0.3
314,746 + +0.8
314,755 + -0.5
314,813 - -0.5
314,831 + +0.5
314,831 + -0.2
314,953 + IAI46_01430 0.29 +1.8
314,974 + IAI46_01430 0.32 +0.3
314,974 + IAI46_01430 0.32 +0.8
314,974 + IAI46_01430 0.32 +1.6
314,975 - IAI46_01430 0.32 +0.6
314,975 - IAI46_01430 0.32 +0.1
314,995 + IAI46_01430 0.36 +1.3
314,996 - IAI46_01430 0.36 -0.8
315,084 + IAI46_01430 0.49 +0.3
315,107 + IAI46_01430 0.53 +0.8
315,108 - IAI46_01430 0.53 +0.5
315,108 - IAI46_01430 0.53 +0.4
315,120 - IAI46_01430 0.55 -0.6
315,269 - IAI46_01430 0.78 -0.5
315,324 + IAI46_01430 0.87 +0.5
315,359 + +0.2
315,359 + +0.6
315,360 - -0.6
315,360 - +0.8
315,360 - +0.2
315,371 + -0.0
315,371 + +0.2
315,372 - +0.3
315,396 + +0.3
315,455 + +0.0
315,455 + -0.2
315,520 - -0.2
315,520 - +0.2
315,598 + +0.2

Or see this region's nucleotide sequence