Strain Fitness in Serratia liquefaciens MT49 around IAI46_01395

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01385 and IAI46_01390 are separated by 81 nucleotidesIAI46_01390 and IAI46_01395 are separated by 199 nucleotidesIAI46_01395 and IAI46_01400 overlap by 4 nucleotidesIAI46_01400 and IAI46_01405 are separated by 92 nucleotides IAI46_01385: IAI46_01385 - 23S ribosomal RNA, at 302,649 to 305,586 _01385 IAI46_01390: IAI46_01390 - 5S ribosomal RNA, at 305,668 to 305,783 _01390 IAI46_01395: IAI46_01395 - cation/acetate symporter ActP, at 305,983 to 307,635 _01395 IAI46_01400: IAI46_01400 - DUF485 domain-containing protein, at 307,632 to 307,943 _01400 IAI46_01405: IAI46_01405 - acetate--CoA ligase, at 308,036 to 309,994 _01405 Position (kb) 305 306 307 308Strain fitness (log2 ratio) -2 -1 0 1 2at 305.867 kb on + strandat 305.867 kb on + strandat 305.867 kb on + strandat 305.868 kb on - strandat 305.868 kb on - strandat 305.916 kb on - strandat 305.973 kb on + strandat 305.973 kb on + strandat 305.974 kb on - strandat 305.974 kb on - strandat 305.974 kb on - strandat 305.974 kb on - strandat 305.977 kb on - strandat 305.977 kb on - strandat 305.985 kb on - strandat 306.140 kb on + strandat 306.146 kb on + strandat 306.146 kb on + strandat 306.152 kb on + strand, within IAI46_01395at 306.152 kb on + strand, within IAI46_01395at 306.153 kb on - strand, within IAI46_01395at 306.153 kb on - strand, within IAI46_01395at 306.153 kb on - strand, within IAI46_01395at 306.279 kb on - strand, within IAI46_01395at 306.294 kb on + strand, within IAI46_01395at 306.306 kb on + strand, within IAI46_01395at 306.307 kb on - strand, within IAI46_01395at 306.307 kb on - strand, within IAI46_01395at 306.322 kb on - strand, within IAI46_01395at 306.322 kb on - strand, within IAI46_01395at 306.322 kb on - strand, within IAI46_01395at 306.342 kb on + strand, within IAI46_01395at 306.343 kb on - strand, within IAI46_01395at 306.382 kb on + strand, within IAI46_01395at 306.383 kb on - strand, within IAI46_01395at 306.473 kb on + strand, within IAI46_01395at 306.488 kb on - strand, within IAI46_01395at 306.558 kb on + strand, within IAI46_01395at 306.559 kb on - strand, within IAI46_01395at 306.596 kb on - strand, within IAI46_01395at 306.696 kb on + strand, within IAI46_01395at 306.697 kb on - strand, within IAI46_01395at 306.697 kb on - strand, within IAI46_01395at 306.697 kb on - strand, within IAI46_01395at 306.697 kb on - strand, within IAI46_01395at 306.709 kb on - strand, within IAI46_01395at 306.716 kb on + strand, within IAI46_01395at 306.716 kb on + strand, within IAI46_01395at 306.716 kb on + strand, within IAI46_01395at 306.716 kb on + strand, within IAI46_01395at 306.737 kb on + strand, within IAI46_01395at 306.737 kb on + strand, within IAI46_01395at 306.737 kb on + strand, within IAI46_01395at 306.763 kb on - strand, within IAI46_01395at 306.795 kb on + strand, within IAI46_01395at 306.795 kb on + strand, within IAI46_01395at 306.796 kb on - strand, within IAI46_01395at 306.796 kb on - strand, within IAI46_01395at 306.796 kb on - strand, within IAI46_01395at 306.991 kb on + strand, within IAI46_01395at 307.009 kb on - strand, within IAI46_01395at 307.052 kb on + strand, within IAI46_01395at 307.052 kb on + strand, within IAI46_01395at 307.052 kb on + strand, within IAI46_01395at 307.053 kb on - strand, within IAI46_01395at 307.094 kb on + strand, within IAI46_01395at 307.154 kb on + strand, within IAI46_01395at 307.221 kb on - strand, within IAI46_01395at 307.244 kb on + strand, within IAI46_01395at 307.257 kb on + strand, within IAI46_01395at 307.257 kb on + strand, within IAI46_01395at 307.344 kb on + strand, within IAI46_01395at 307.344 kb on + strand, within IAI46_01395at 307.344 kb on + strand, within IAI46_01395at 307.345 kb on - strand, within IAI46_01395at 307.345 kb on - strand, within IAI46_01395at 307.345 kb on - strand, within IAI46_01395at 307.345 kb on - strand, within IAI46_01395at 307.347 kb on - strand, within IAI46_01395at 307.362 kb on + strand, within IAI46_01395at 307.363 kb on - strand, within IAI46_01395at 307.445 kb on + strand, within IAI46_01395at 307.446 kb on - strand, within IAI46_01395at 307.446 kb on - strand, within IAI46_01395at 307.446 kb on - strand, within IAI46_01395at 307.448 kb on + strand, within IAI46_01395at 307.449 kb on - strand, within IAI46_01395at 307.449 kb on - strand, within IAI46_01395at 307.449 kb on - strand, within IAI46_01395at 307.484 kb on + strandat 307.485 kb on - strandat 307.485 kb on - strandat 307.485 kb on - strandat 307.491 kb on + strandat 307.491 kb on + strandat 307.492 kb on - strandat 307.492 kb on - strandat 307.492 kb on - strandat 307.493 kb on + strandat 307.493 kb on + strandat 307.493 kb on + strandat 307.493 kb on + strandat 307.493 kb on + strandat 307.493 kb on + strandat 307.493 kb on + strandat 307.494 kb on - strandat 307.494 kb on - strandat 307.494 kb on - strandat 307.494 kb on - strandat 307.597 kb on + strandat 307.625 kb on - strandat 307.695 kb on + strand, within IAI46_01400at 307.696 kb on - strand, within IAI46_01400at 307.699 kb on + strand, within IAI46_01400at 307.699 kb on + strand, within IAI46_01400at 307.699 kb on + strand, within IAI46_01400at 307.700 kb on - strand, within IAI46_01400at 307.763 kb on + strand, within IAI46_01400at 307.763 kb on + strand, within IAI46_01400at 307.764 kb on - strand, within IAI46_01400at 307.764 kb on - strand, within IAI46_01400at 307.764 kb on - strand, within IAI46_01400at 307.766 kb on + strand, within IAI46_01400at 307.767 kb on - strand, within IAI46_01400at 307.818 kb on + strand, within IAI46_01400at 307.835 kb on - strand, within IAI46_01400at 307.927 kb on + strandat 307.927 kb on + strandat 307.927 kb on + strandat 307.958 kb on + strandat 307.958 kb on + strandat 307.959 kb on - strandat 307.963 kb on - strandat 307.963 kb on - strandat 307.973 kb on + strandat 307.973 kb on + strandat 307.974 kb on - strandat 308.003 kb on - strandat 308.037 kb on + strandat 308.037 kb on + strandat 308.037 kb on + strandat 308.038 kb on - strandat 308.085 kb on - strandat 308.110 kb on + strandat 308.111 kb on - strandat 308.155 kb on + strandat 308.156 kb on - strandat 308.234 kb on + strand, within IAI46_01405at 308.243 kb on - strand, within IAI46_01405at 308.267 kb on - strand, within IAI46_01405at 308.268 kb on + strand, within IAI46_01405at 308.268 kb on + strand, within IAI46_01405at 308.308 kb on + strand, within IAI46_01405at 308.308 kb on + strand, within IAI46_01405at 308.308 kb on + strand, within IAI46_01405at 308.308 kb on + strand, within IAI46_01405at 308.308 kb on + strand, within IAI46_01405at 308.309 kb on - strand, within IAI46_01405at 308.310 kb on + strand, within IAI46_01405at 308.311 kb on - strand, within IAI46_01405at 308.311 kb on - strand, within IAI46_01405at 308.311 kb on - strand, within IAI46_01405at 308.311 kb on - strand, within IAI46_01405at 308.311 kb on - strand, within IAI46_01405at 308.316 kb on + strand, within IAI46_01405at 308.316 kb on + strand, within IAI46_01405at 308.332 kb on + strand, within IAI46_01405at 308.332 kb on + strand, within IAI46_01405at 308.332 kb on + strand, within IAI46_01405at 308.339 kb on - strand, within IAI46_01405at 308.466 kb on + strand, within IAI46_01405at 308.469 kb on + strand, within IAI46_01405at 308.509 kb on - strand, within IAI46_01405at 308.509 kb on - strand, within IAI46_01405at 308.532 kb on + strand, within IAI46_01405at 308.532 kb on + strand, within IAI46_01405at 308.533 kb on - strand, within IAI46_01405at 308.533 kb on - strand, within IAI46_01405

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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305,867 + +0.8
305,867 + -0.3
305,867 + +0.3
305,868 - +0.7
305,868 - +0.8
305,916 - +0.8
305,973 + +0.9
305,973 + -0.1
305,974 - +1.8
305,974 - -0.2
305,974 - +0.1
305,974 - +0.1
305,977 - +0.1
305,977 - +0.9
305,985 - -0.8
306,140 + -1.1
306,146 + +0.2
306,146 + +0.2
306,152 + IAI46_01395 0.10 -1.9
306,152 + IAI46_01395 0.10 +1.4
306,153 - IAI46_01395 0.10 -0.1
306,153 - IAI46_01395 0.10 -0.0
306,153 - IAI46_01395 0.10 +0.3
306,279 - IAI46_01395 0.18 -0.8
306,294 + IAI46_01395 0.19 +1.0
306,306 + IAI46_01395 0.20 -0.9
306,307 - IAI46_01395 0.20 +0.2
306,307 - IAI46_01395 0.20 +0.8
306,322 - IAI46_01395 0.21 +0.3
306,322 - IAI46_01395 0.21 +0.1
306,322 - IAI46_01395 0.21 +0.3
306,342 + IAI46_01395 0.22 +0.4
306,343 - IAI46_01395 0.22 +0.1
306,382 + IAI46_01395 0.24 +1.0
306,383 - IAI46_01395 0.24 +0.4
306,473 + IAI46_01395 0.30 +0.0
306,488 - IAI46_01395 0.31 +1.3
306,558 + IAI46_01395 0.35 -0.7
306,559 - IAI46_01395 0.35 +0.3
306,596 - IAI46_01395 0.37 -0.5
306,696 + IAI46_01395 0.43 +0.7
306,697 - IAI46_01395 0.43 +0.6
306,697 - IAI46_01395 0.43 +0.5
306,697 - IAI46_01395 0.43 -1.1
306,697 - IAI46_01395 0.43 +1.3
306,709 - IAI46_01395 0.44 -1.0
306,716 + IAI46_01395 0.44 -1.0
306,716 + IAI46_01395 0.44 +0.2
306,716 + IAI46_01395 0.44 +0.1
306,716 + IAI46_01395 0.44 +0.7
306,737 + IAI46_01395 0.46 +1.3
306,737 + IAI46_01395 0.46 +0.7
306,737 + IAI46_01395 0.46 +0.1
306,763 - IAI46_01395 0.47 -0.2
306,795 + IAI46_01395 0.49 -0.4
306,795 + IAI46_01395 0.49 +0.1
306,796 - IAI46_01395 0.49 +0.8
306,796 - IAI46_01395 0.49 +0.8
306,796 - IAI46_01395 0.49 +1.8
306,991 + IAI46_01395 0.61 +0.2
307,009 - IAI46_01395 0.62 +0.2
307,052 + IAI46_01395 0.65 +0.9
307,052 + IAI46_01395 0.65 -0.1
307,052 + IAI46_01395 0.65 -0.1
307,053 - IAI46_01395 0.65 -0.7
307,094 + IAI46_01395 0.67 +0.2
307,154 + IAI46_01395 0.71 +0.3
307,221 - IAI46_01395 0.75 +0.3
307,244 + IAI46_01395 0.76 +1.0
307,257 + IAI46_01395 0.77 +1.8
307,257 + IAI46_01395 0.77 +0.6
307,344 + IAI46_01395 0.82 +0.7
307,344 + IAI46_01395 0.82 -0.7
307,344 + IAI46_01395 0.82 -0.9
307,345 - IAI46_01395 0.82 +0.8
307,345 - IAI46_01395 0.82 +0.0
307,345 - IAI46_01395 0.82 +0.6
307,345 - IAI46_01395 0.82 +0.5
307,347 - IAI46_01395 0.83 +0.1
307,362 + IAI46_01395 0.83 -0.5
307,363 - IAI46_01395 0.83 +0.5
307,445 + IAI46_01395 0.88 +0.1
307,446 - IAI46_01395 0.89 +1.8
307,446 - IAI46_01395 0.89 +0.4
307,446 - IAI46_01395 0.89 -0.0
307,448 + IAI46_01395 0.89 +0.9
307,449 - IAI46_01395 0.89 +0.6
307,449 - IAI46_01395 0.89 -0.4
307,449 - IAI46_01395 0.89 +0.3
307,484 + +0.3
307,485 - +0.5
307,485 - +0.1
307,485 - +0.3
307,491 + +1.0
307,491 + +0.3
307,492 - +0.8
307,492 - -0.4
307,492 - +1.0
307,493 + -0.0
307,493 + -0.5
307,493 + +0.6
307,493 + -0.3
307,493 + +0.3
307,493 + -0.4
307,493 + +0.4
307,494 - -0.2
307,494 - -0.7
307,494 - -1.8
307,494 - +0.1
307,597 + +1.1
307,625 - +0.6
307,695 + IAI46_01400 0.20 +1.2
307,696 - IAI46_01400 0.21 +0.1
307,699 + IAI46_01400 0.21 -1.6
307,699 + IAI46_01400 0.21 -0.1
307,699 + IAI46_01400 0.21 +0.6
307,700 - IAI46_01400 0.22 -0.3
307,763 + IAI46_01400 0.42 +0.3
307,763 + IAI46_01400 0.42 +0.1
307,764 - IAI46_01400 0.42 -0.3
307,764 - IAI46_01400 0.42 +2.4
307,764 - IAI46_01400 0.42 -1.2
307,766 + IAI46_01400 0.43 +0.1
307,767 - IAI46_01400 0.43 +0.2
307,818 + IAI46_01400 0.60 +0.2
307,835 - IAI46_01400 0.65 -1.0
307,927 + +0.6
307,927 + +0.6
307,927 + -0.4
307,958 + +0.6
307,958 + +0.5
307,959 - +0.1
307,963 - +0.2
307,963 - -0.5
307,973 + +0.5
307,973 + -0.3
307,974 - -0.3
308,003 - +0.1
308,037 + +1.0
308,037 + +0.8
308,037 + +0.4
308,038 - -0.4
308,085 - +0.5
308,110 + +0.2
308,111 - +0.9
308,155 + -0.3
308,156 - +0.1
308,234 + IAI46_01405 0.10 +2.0
308,243 - IAI46_01405 0.11 +1.1
308,267 - IAI46_01405 0.12 +0.1
308,268 + IAI46_01405 0.12 -0.3
308,268 + IAI46_01405 0.12 +0.4
308,308 + IAI46_01405 0.14 -2.0
308,308 + IAI46_01405 0.14 +0.1
308,308 + IAI46_01405 0.14 -0.1
308,308 + IAI46_01405 0.14 +0.3
308,308 + IAI46_01405 0.14 +0.8
308,309 - IAI46_01405 0.14 +0.5
308,310 + IAI46_01405 0.14 +0.7
308,311 - IAI46_01405 0.14 +0.4
308,311 - IAI46_01405 0.14 -0.6
308,311 - IAI46_01405 0.14 -0.2
308,311 - IAI46_01405 0.14 +0.5
308,311 - IAI46_01405 0.14 -0.1
308,316 + IAI46_01405 0.14 +0.5
308,316 + IAI46_01405 0.14 +0.5
308,332 + IAI46_01405 0.15 +0.7
308,332 + IAI46_01405 0.15 -0.9
308,332 + IAI46_01405 0.15 +0.6
308,339 - IAI46_01405 0.15 +0.1
308,466 + IAI46_01405 0.22 +0.2
308,469 + IAI46_01405 0.22 -0.0
308,509 - IAI46_01405 0.24 +0.5
308,509 - IAI46_01405 0.24 +0.2
308,532 + IAI46_01405 0.25 +1.5
308,532 + IAI46_01405 0.25 +0.0
308,533 - IAI46_01405 0.25 +0.8
308,533 - IAI46_01405 0.25 -0.9

Or see this region's nucleotide sequence