Strain Fitness in Serratia liquefaciens MT49 around IAI46_01270

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01265 and IAI46_01270 are separated by 171 nucleotidesIAI46_01270 and IAI46_01275 overlap by 1 nucleotidesIAI46_01275 and IAI46_01280 are separated by 1 nucleotides IAI46_01265: IAI46_01265 - DNA-directed RNA polymerase subunit beta', at 277,853 to 282,073 _01265 IAI46_01270: IAI46_01270 - GNAT family N-acetyltransferase, at 282,245 to 282,691 _01270 IAI46_01275: IAI46_01275 - oxidoreductase, at 282,691 to 283,155 _01275 IAI46_01280: IAI46_01280 - HAMP domain-containing histidine kinase, at 283,157 to 284,449 _01280 Position (kb) 282 283Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 281.945 kb on + strandat 281.946 kb on - strandat 282.119 kb on - strandat 282.176 kb on + strandat 282.179 kb on + strandat 282.179 kb on + strandat 282.179 kb on + strandat 282.179 kb on + strandat 282.185 kb on + strandat 282.185 kb on + strandat 282.223 kb on + strandat 282.223 kb on + strandat 282.224 kb on - strandat 282.238 kb on + strandat 282.238 kb on + strandat 282.238 kb on + strandat 282.239 kb on - strandat 282.239 kb on - strandat 282.244 kb on + strandat 282.245 kb on - strandat 282.245 kb on - strandat 282.293 kb on + strand, within IAI46_01270at 282.293 kb on + strand, within IAI46_01270at 282.293 kb on + strand, within IAI46_01270at 282.293 kb on + strand, within IAI46_01270at 282.294 kb on - strand, within IAI46_01270at 282.294 kb on - strand, within IAI46_01270at 282.299 kb on + strand, within IAI46_01270at 282.299 kb on + strand, within IAI46_01270at 282.354 kb on - strand, within IAI46_01270at 282.354 kb on - strand, within IAI46_01270at 282.361 kb on + strand, within IAI46_01270at 282.362 kb on - strand, within IAI46_01270at 282.362 kb on - strand, within IAI46_01270at 282.382 kb on + strand, within IAI46_01270at 282.382 kb on + strand, within IAI46_01270at 282.382 kb on + strand, within IAI46_01270at 282.382 kb on + strand, within IAI46_01270at 282.385 kb on + strand, within IAI46_01270at 282.425 kb on + strand, within IAI46_01270at 282.451 kb on + strand, within IAI46_01270at 282.451 kb on + strand, within IAI46_01270at 282.451 kb on + strand, within IAI46_01270at 282.523 kb on - strand, within IAI46_01270at 282.581 kb on - strand, within IAI46_01270at 282.612 kb on - strand, within IAI46_01270at 282.685 kb on + strandat 282.685 kb on + strandat 282.686 kb on - strandat 282.717 kb on - strandat 282.749 kb on - strand, within IAI46_01275at 282.749 kb on - strand, within IAI46_01275at 282.749 kb on - strand, within IAI46_01275at 282.749 kb on - strand, within IAI46_01275at 282.749 kb on - strand, within IAI46_01275at 282.769 kb on + strand, within IAI46_01275at 282.804 kb on + strand, within IAI46_01275at 282.805 kb on - strand, within IAI46_01275at 282.843 kb on + strand, within IAI46_01275at 282.856 kb on - strand, within IAI46_01275at 282.856 kb on - strand, within IAI46_01275at 282.930 kb on + strand, within IAI46_01275at 282.930 kb on + strand, within IAI46_01275at 282.931 kb on - strand, within IAI46_01275at 282.958 kb on + strand, within IAI46_01275at 282.959 kb on - strand, within IAI46_01275at 282.959 kb on - strand, within IAI46_01275at 282.959 kb on - strand, within IAI46_01275at 282.965 kb on - strand, within IAI46_01275at 282.991 kb on - strand, within IAI46_01275at 282.991 kb on - strand, within IAI46_01275at 282.994 kb on + strand, within IAI46_01275at 282.994 kb on + strand, within IAI46_01275at 282.995 kb on - strand, within IAI46_01275at 283.003 kb on - strand, within IAI46_01275at 283.014 kb on + strand, within IAI46_01275at 283.033 kb on - strand, within IAI46_01275at 283.066 kb on - strand, within IAI46_01275at 283.069 kb on + strand, within IAI46_01275at 283.069 kb on + strand, within IAI46_01275at 283.070 kb on + strand, within IAI46_01275at 283.070 kb on - strand, within IAI46_01275at 283.070 kb on - strand, within IAI46_01275at 283.080 kb on + strand, within IAI46_01275at 283.133 kb on + strandat 283.134 kb on - strandat 283.134 kb on - strandat 283.218 kb on + strandat 283.256 kb on + strandat 283.256 kb on + strandat 283.257 kb on - strandat 283.286 kb on + strandat 283.286 kb on + strandat 283.358 kb on - strand, within IAI46_01280at 283.361 kb on + strand, within IAI46_01280at 283.362 kb on - strand, within IAI46_01280at 283.372 kb on + strand, within IAI46_01280at 283.513 kb on + strand, within IAI46_01280at 283.552 kb on + strand, within IAI46_01280at 283.552 kb on + strand, within IAI46_01280at 283.552 kb on + strand, within IAI46_01280at 283.552 kb on + strand, within IAI46_01280at 283.553 kb on - strand, within IAI46_01280at 283.555 kb on - strand, within IAI46_01280at 283.690 kb on + strand, within IAI46_01280

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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281,945 + -1.0
281,946 - -1.0
282,119 - +0.3
282,176 + -0.1
282,179 + -0.7
282,179 + +0.9
282,179 + +0.3
282,179 + -0.0
282,185 + +0.3
282,185 + -2.1
282,223 + +1.8
282,223 + -3.2
282,224 - +0.9
282,238 + -1.3
282,238 + -0.3
282,238 + -0.1
282,239 - -0.6
282,239 - -0.1
282,244 + -0.1
282,245 - -0.0
282,245 - -0.2
282,293 + IAI46_01270 0.11 +0.4
282,293 + IAI46_01270 0.11 +1.0
282,293 + IAI46_01270 0.11 +0.5
282,293 + IAI46_01270 0.11 +0.1
282,294 - IAI46_01270 0.11 +0.4
282,294 - IAI46_01270 0.11 +0.0
282,299 + IAI46_01270 0.12 +0.9
282,299 + IAI46_01270 0.12 -0.7
282,354 - IAI46_01270 0.24 +1.0
282,354 - IAI46_01270 0.24 +0.3
282,361 + IAI46_01270 0.26 +0.1
282,362 - IAI46_01270 0.26 -2.2
282,362 - IAI46_01270 0.26 +0.8
282,382 + IAI46_01270 0.31 +0.1
282,382 + IAI46_01270 0.31 +1.4
282,382 + IAI46_01270 0.31 -0.7
282,382 + IAI46_01270 0.31 +1.5
282,385 + IAI46_01270 0.31 -0.0
282,425 + IAI46_01270 0.40 +0.0
282,451 + IAI46_01270 0.46 +0.8
282,451 + IAI46_01270 0.46 +0.9
282,451 + IAI46_01270 0.46 +0.0
282,523 - IAI46_01270 0.62 +0.9
282,581 - IAI46_01270 0.75 +0.2
282,612 - IAI46_01270 0.82 +0.9
282,685 + -0.8
282,685 + +0.5
282,686 - +0.1
282,717 - -0.2
282,749 - IAI46_01275 0.12 +0.4
282,749 - IAI46_01275 0.12 +1.2
282,749 - IAI46_01275 0.12 +1.0
282,749 - IAI46_01275 0.12 -0.6
282,749 - IAI46_01275 0.12 +1.2
282,769 + IAI46_01275 0.17 -0.1
282,804 + IAI46_01275 0.24 +0.5
282,805 - IAI46_01275 0.25 +1.2
282,843 + IAI46_01275 0.33 -0.5
282,856 - IAI46_01275 0.35 +0.5
282,856 - IAI46_01275 0.35 +0.5
282,930 + IAI46_01275 0.51 +1.1
282,930 + IAI46_01275 0.51 +1.2
282,931 - IAI46_01275 0.52 -0.9
282,958 + IAI46_01275 0.57 +0.4
282,959 - IAI46_01275 0.58 +0.3
282,959 - IAI46_01275 0.58 -0.7
282,959 - IAI46_01275 0.58 +1.0
282,965 - IAI46_01275 0.59 +0.9
282,991 - IAI46_01275 0.65 +0.6
282,991 - IAI46_01275 0.65 +0.5
282,994 + IAI46_01275 0.65 +0.3
282,994 + IAI46_01275 0.65 +1.2
282,995 - IAI46_01275 0.65 +0.5
283,003 - IAI46_01275 0.67 -0.0
283,014 + IAI46_01275 0.69 -0.2
283,033 - IAI46_01275 0.74 +0.2
283,066 - IAI46_01275 0.81 +0.5
283,069 + IAI46_01275 0.81 -0.2
283,069 + IAI46_01275 0.81 +0.1
283,070 + IAI46_01275 0.82 -0.5
283,070 - IAI46_01275 0.82 +1.0
283,070 - IAI46_01275 0.82 +0.1
283,080 + IAI46_01275 0.84 +0.5
283,133 + -0.2
283,134 - -0.3
283,134 - +0.5
283,218 + +0.5
283,256 + -1.7
283,256 + +0.2
283,257 - +0.6
283,286 + -0.4
283,286 + -0.5
283,358 - IAI46_01280 0.16 -1.3
283,361 + IAI46_01280 0.16 +0.7
283,362 - IAI46_01280 0.16 -0.0
283,372 + IAI46_01280 0.17 -0.4
283,513 + IAI46_01280 0.28 -0.1
283,552 + IAI46_01280 0.31 -0.4
283,552 + IAI46_01280 0.31 +0.6
283,552 + IAI46_01280 0.31 +0.3
283,552 + IAI46_01280 0.31 +0.3
283,553 - IAI46_01280 0.31 +0.8
283,555 - IAI46_01280 0.31 -0.5
283,690 + IAI46_01280 0.41 -0.7

Or see this region's nucleotide sequence