Strain Fitness in Serratia liquefaciens MT49 around IAI46_01115

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01110 and IAI46_01115 are separated by 63 nucleotidesIAI46_01115 and IAI46_01120 are separated by 174 nucleotides IAI46_01110: IAI46_01110 - dipeptidase PepE, at 245,361 to 246,086 _01110 IAI46_01115: IAI46_01115 - 4-hydroxy-3-polyprenylbenzoate decarboxylase, at 246,150 to 247,670 _01115 IAI46_01120: IAI46_01120 - NAD(P)H-flavin reductase, at 247,845 to 248,546 _01120 Position (kb) 246 247 248Strain fitness (log2 ratio) -2 -1 0 1 2 3at 245.150 kb on + strandat 245.150 kb on + strandat 245.169 kb on + strandat 245.173 kb on + strandat 245.173 kb on + strandat 245.173 kb on + strandat 245.173 kb on + strandat 245.173 kb on + strandat 245.173 kb on + strandat 245.173 kb on + strandat 245.173 kb on + strandat 245.174 kb on - strandat 245.174 kb on - strandat 245.174 kb on - strandat 245.174 kb on - strandat 245.174 kb on - strandat 245.174 kb on - strandat 245.174 kb on - strandat 245.195 kb on + strandat 245.196 kb on - strandat 245.196 kb on - strandat 245.228 kb on + strandat 245.229 kb on - strandat 245.247 kb on + strandat 245.248 kb on - strandat 245.248 kb on - strandat 245.266 kb on + strandat 245.266 kb on + strandat 245.300 kb on - strandat 245.300 kb on - strandat 245.368 kb on + strandat 245.369 kb on - strandat 245.462 kb on + strand, within IAI46_01110at 245.462 kb on + strand, within IAI46_01110at 245.463 kb on - strand, within IAI46_01110at 245.473 kb on + strand, within IAI46_01110at 245.473 kb on + strand, within IAI46_01110at 245.473 kb on + strand, within IAI46_01110at 245.474 kb on - strand, within IAI46_01110at 245.477 kb on + strand, within IAI46_01110at 245.505 kb on + strand, within IAI46_01110at 245.552 kb on + strand, within IAI46_01110at 245.553 kb on - strand, within IAI46_01110at 245.559 kb on - strand, within IAI46_01110at 245.559 kb on - strand, within IAI46_01110at 245.665 kb on + strand, within IAI46_01110at 245.699 kb on + strand, within IAI46_01110at 245.699 kb on + strand, within IAI46_01110at 245.699 kb on + strand, within IAI46_01110at 245.700 kb on - strand, within IAI46_01110at 245.700 kb on - strand, within IAI46_01110at 245.700 kb on - strand, within IAI46_01110at 245.700 kb on - strand, within IAI46_01110at 245.709 kb on + strand, within IAI46_01110at 245.710 kb on - strand, within IAI46_01110at 245.732 kb on + strand, within IAI46_01110at 245.732 kb on + strand, within IAI46_01110at 245.768 kb on + strand, within IAI46_01110at 245.768 kb on + strand, within IAI46_01110at 245.768 kb on + strand, within IAI46_01110at 245.769 kb on - strand, within IAI46_01110at 245.769 kb on - strand, within IAI46_01110at 245.769 kb on - strand, within IAI46_01110at 245.780 kb on + strand, within IAI46_01110at 245.781 kb on - strand, within IAI46_01110at 245.792 kb on - strand, within IAI46_01110at 245.792 kb on - strand, within IAI46_01110at 245.835 kb on + strand, within IAI46_01110at 245.835 kb on + strand, within IAI46_01110at 245.835 kb on + strand, within IAI46_01110at 245.835 kb on + strand, within IAI46_01110at 245.836 kb on - strand, within IAI46_01110at 245.849 kb on + strand, within IAI46_01110at 245.853 kb on - strand, within IAI46_01110at 245.963 kb on + strand, within IAI46_01110at 245.964 kb on - strand, within IAI46_01110at 245.976 kb on + strand, within IAI46_01110at 245.981 kb on + strand, within IAI46_01110at 245.981 kb on + strand, within IAI46_01110at 246.074 kb on + strandat 246.146 kb on + strandat 246.146 kb on + strandat 246.146 kb on + strandat 246.147 kb on - strandat 246.147 kb on - strandat 246.147 kb on - strandat 246.148 kb on + strandat 246.148 kb on + strandat 246.172 kb on + strandat 247.666 kb on + strandat 247.666 kb on + strandat 247.666 kb on + strandat 247.666 kb on + strandat 247.666 kb on + strandat 247.666 kb on + strandat 247.666 kb on + strandat 247.667 kb on - strandat 247.668 kb on + strandat 247.668 kb on + strandat 247.668 kb on + strandat 247.668 kb on + strandat 247.668 kb on + strandat 247.668 kb on + strandat 247.668 kb on + strandat 247.668 kb on + strandat 247.669 kb on - strandat 247.669 kb on - strandat 247.669 kb on - strandat 247.673 kb on + strandat 247.683 kb on - strandat 247.728 kb on + strandat 247.728 kb on + strandat 247.728 kb on + strandat 247.728 kb on + strandat 247.736 kb on + strandat 247.784 kb on + strandat 247.784 kb on + strandat 247.784 kb on + strandat 247.793 kb on + strandat 247.793 kb on + strandat 247.793 kb on + strandat 247.794 kb on - strandat 247.852 kb on + strandat 247.852 kb on + strandat 247.876 kb on + strandat 247.950 kb on + strand, within IAI46_01120at 247.951 kb on - strand, within IAI46_01120at 247.951 kb on - strand, within IAI46_01120at 247.951 kb on - strand, within IAI46_01120at 248.022 kb on + strand, within IAI46_01120at 248.023 kb on - strand, within IAI46_01120at 248.024 kb on + strand, within IAI46_01120at 248.024 kb on + strand, within IAI46_01120at 248.194 kb on - strand, within IAI46_01120at 248.194 kb on - strand, within IAI46_01120at 248.243 kb on + strand, within IAI46_01120at 248.249 kb on + strand, within IAI46_01120at 248.249 kb on + strand, within IAI46_01120at 248.250 kb on - strand, within IAI46_01120at 248.250 kb on - strand, within IAI46_01120at 248.250 kb on - strand, within IAI46_01120at 248.253 kb on + strand, within IAI46_01120at 248.254 kb on - strand, within IAI46_01120at 248.254 kb on - strand, within IAI46_01120at 248.401 kb on + strand, within IAI46_01120at 248.414 kb on - strand, within IAI46_01120at 248.439 kb on + strand, within IAI46_01120at 248.440 kb on - strand, within IAI46_01120at 248.441 kb on + strand, within IAI46_01120at 248.442 kb on - strand, within IAI46_01120at 248.544 kb on + strandat 248.545 kb on - strandat 248.545 kb on - strandat 248.545 kb on - strandat 248.618 kb on + strandat 248.619 kb on - strandat 248.648 kb on + strandat 248.648 kb on + strandat 248.658 kb on - strandat 248.658 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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245,150 + -0.2
245,150 + -0.1
245,169 + +0.5
245,173 + +0.1
245,173 + -0.6
245,173 + -0.9
245,173 + +0.1
245,173 + +1.1
245,173 + -0.0
245,173 + +1.1
245,173 + +0.7
245,174 - +0.6
245,174 - +0.6
245,174 - +0.6
245,174 - +0.7
245,174 - -0.1
245,174 - +0.4
245,174 - +0.3
245,195 + -0.5
245,196 - +0.5
245,196 - +0.1
245,228 + +0.2
245,229 - -0.9
245,247 + -0.7
245,248 - +0.0
245,248 - +0.0
245,266 + +0.3
245,266 + +0.3
245,300 - -0.5
245,300 - -0.3
245,368 + +1.1
245,369 - +0.8
245,462 + IAI46_01110 0.14 +1.3
245,462 + IAI46_01110 0.14 -0.0
245,463 - IAI46_01110 0.14 -0.6
245,473 + IAI46_01110 0.15 +0.0
245,473 + IAI46_01110 0.15 +0.8
245,473 + IAI46_01110 0.15 +0.0
245,474 - IAI46_01110 0.16 +0.8
245,477 + IAI46_01110 0.16 +0.5
245,505 + IAI46_01110 0.20 +0.1
245,552 + IAI46_01110 0.26 -0.3
245,553 - IAI46_01110 0.26 +1.2
245,559 - IAI46_01110 0.27 +0.6
245,559 - IAI46_01110 0.27 +0.3
245,665 + IAI46_01110 0.42 +0.3
245,699 + IAI46_01110 0.47 -0.5
245,699 + IAI46_01110 0.47 +0.2
245,699 + IAI46_01110 0.47 +0.0
245,700 - IAI46_01110 0.47 -0.4
245,700 - IAI46_01110 0.47 +0.1
245,700 - IAI46_01110 0.47 -0.7
245,700 - IAI46_01110 0.47 -0.2
245,709 + IAI46_01110 0.48 -0.3
245,710 - IAI46_01110 0.48 -0.5
245,732 + IAI46_01110 0.51 -0.5
245,732 + IAI46_01110 0.51 -0.1
245,768 + IAI46_01110 0.56 +0.1
245,768 + IAI46_01110 0.56 +0.5
245,768 + IAI46_01110 0.56 +0.8
245,769 - IAI46_01110 0.56 -0.3
245,769 - IAI46_01110 0.56 -0.2
245,769 - IAI46_01110 0.56 -0.9
245,780 + IAI46_01110 0.58 -0.1
245,781 - IAI46_01110 0.58 +0.0
245,792 - IAI46_01110 0.59 +0.0
245,792 - IAI46_01110 0.59 -0.5
245,835 + IAI46_01110 0.65 -0.5
245,835 + IAI46_01110 0.65 +0.2
245,835 + IAI46_01110 0.65 +0.4
245,835 + IAI46_01110 0.65 -0.1
245,836 - IAI46_01110 0.65 +0.1
245,849 + IAI46_01110 0.67 -0.8
245,853 - IAI46_01110 0.68 +0.2
245,963 + IAI46_01110 0.83 +0.8
245,964 - IAI46_01110 0.83 +0.3
245,976 + IAI46_01110 0.85 +0.2
245,981 + IAI46_01110 0.85 +0.3
245,981 + IAI46_01110 0.85 -0.6
246,074 + +1.7
246,146 + +0.3
246,146 + +1.0
246,146 + +0.7
246,147 - +1.3
246,147 - +0.9
246,147 - +0.2
246,148 + -0.1
246,148 + +0.2
246,172 + -1.0
247,666 + +0.6
247,666 + +0.8
247,666 + +0.2
247,666 + -0.7
247,666 + +0.5
247,666 + +0.6
247,666 + +0.1
247,667 - +0.7
247,668 + +0.2
247,668 + +0.9
247,668 + +0.3
247,668 + +1.6
247,668 + +1.5
247,668 + +0.2
247,668 + +0.4
247,668 + +0.1
247,669 - +0.8
247,669 - -0.3
247,669 - +2.8
247,673 + -0.6
247,683 - +1.6
247,728 + +0.6
247,728 + +0.6
247,728 + -0.6
247,728 + +0.3
247,736 + +0.2
247,784 + +1.0
247,784 + -0.0
247,784 + +0.8
247,793 + +0.3
247,793 + -0.1
247,793 + -0.3
247,794 - +0.7
247,852 + +0.5
247,852 + +0.5
247,876 + -0.4
247,950 + IAI46_01120 0.15 +0.7
247,951 - IAI46_01120 0.15 +0.3
247,951 - IAI46_01120 0.15 +1.8
247,951 - IAI46_01120 0.15 +1.2
248,022 + IAI46_01120 0.25 +1.2
248,023 - IAI46_01120 0.25 +0.1
248,024 + IAI46_01120 0.25 +0.2
248,024 + IAI46_01120 0.25 -0.3
248,194 - IAI46_01120 0.50 -1.5
248,194 - IAI46_01120 0.50 -0.0
248,243 + IAI46_01120 0.57 +1.2
248,249 + IAI46_01120 0.58 +2.8
248,249 + IAI46_01120 0.58 -0.1
248,250 - IAI46_01120 0.58 +0.6
248,250 - IAI46_01120 0.58 -0.2
248,250 - IAI46_01120 0.58 -1.1
248,253 + IAI46_01120 0.58 +1.2
248,254 - IAI46_01120 0.58 +0.3
248,254 - IAI46_01120 0.58 +2.2
248,401 + IAI46_01120 0.79 +0.7
248,414 - IAI46_01120 0.81 -0.5
248,439 + IAI46_01120 0.85 +1.2
248,440 - IAI46_01120 0.85 +0.8
248,441 + IAI46_01120 0.85 +2.5
248,442 - IAI46_01120 0.85 -1.4
248,544 + -2.2
248,545 - -0.1
248,545 - +0.7
248,545 - -0.1
248,618 + -0.7
248,619 - +0.4
248,648 + -2.1
248,648 + -1.6
248,658 - +0.4
248,658 - +0.8

Or see this region's nucleotide sequence