Strain Fitness in Escherichia coli BW25113 around b2942

Experiment: Putrescine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntspeA and yqgB are separated by 8 nucleotidesyqgB and yqgC are separated by 135 nucleotidesyqgC and metK are separated by 303 nucleotidesmetK and galP are separated by 423 nucleotides b2938: speA - arginine decarboxylase (NCBI), at 3,081,957 to 3,083,933 speA b2939: yqgB - predicted protein (RefSeq), at 3,083,942 to 3,084,073 yqgB b2940: yqgC - hypothetical protein (NCBI), at 3,084,209 to 3,084,424 yqgC b2942: metK - S-adenosylmethionine synthetase (NCBI), at 3,084,728 to 3,085,882 metK b2943: galP - galactose:H+ symporter (galP) (from data), at 3,086,306 to 3,087,700 galP Position (kb) 3084 3085 3086Strain fitness (log2 ratio) -1 0 1at 3083.761 kb on - strandat 3083.772 kb on - strandat 3083.802 kb on - strandat 3083.823 kb on + strandat 3083.834 kb on - strandat 3083.834 kb on - strandat 3083.872 kb on + strandat 3083.874 kb on + strandat 3083.880 kb on - strandat 3083.880 kb on - strandat 3083.911 kb on + strandat 3083.985 kb on + strand, within yqgBat 3084.042 kb on + strand, within yqgBat 3084.150 kb on - strandat 3084.153 kb on + strandat 3084.166 kb on - strandat 3084.181 kb on - strandat 3084.227 kb on + strandat 3084.242 kb on + strand, within yqgCat 3084.259 kb on - strand, within yqgCat 3084.259 kb on - strand, within yqgCat 3084.259 kb on - strand, within yqgCat 3084.285 kb on - strand, within yqgCat 3084.345 kb on - strand, within yqgCat 3084.471 kb on + strandat 3084.632 kb on + strandat 3084.632 kb on + strandat 3085.886 kb on + strandat 3085.886 kb on + strandat 3085.886 kb on + strandat 3085.896 kb on + strandat 3085.984 kb on - strandat 3085.984 kb on - strandat 3086.143 kb on - strandat 3086.233 kb on - strandat 3086.330 kb on + strandat 3086.330 kb on + strandat 3086.370 kb on - strandat 3086.372 kb on + strandat 3086.373 kb on + strandat 3086.482 kb on - strand, within galPat 3086.482 kb on - strand, within galPat 3086.496 kb on + strand, within galPat 3086.660 kb on - strand, within galPat 3086.660 kb on - strand, within galPat 3086.681 kb on - strand, within galPat 3086.681 kb on - strand, within galPat 3086.692 kb on - strand, within galPat 3086.703 kb on - strand, within galPat 3086.757 kb on + strand, within galPat 3086.780 kb on - strand, within galPat 3086.780 kb on - strand, within galPat 3086.797 kb on + strand, within galP

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (N)
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3,083,761 - +0.9
3,083,772 - -0.5
3,083,802 - +0.1
3,083,823 + +0.3
3,083,834 - +0.2
3,083,834 - +0.4
3,083,872 + +0.5
3,083,874 + +0.2
3,083,880 - -1.4
3,083,880 - -0.8
3,083,911 + +0.4
3,083,985 + yqgB b2939 0.33 +1.3
3,084,042 + yqgB b2939 0.76 -0.1
3,084,150 - -0.4
3,084,153 + -0.1
3,084,166 - -0.4
3,084,181 - +0.0
3,084,227 + +0.4
3,084,242 + yqgC b2940 0.15 -1.2
3,084,259 - yqgC b2940 0.23 +0.8
3,084,259 - yqgC b2940 0.23 -0.4
3,084,259 - yqgC b2940 0.23 -0.1
3,084,285 - yqgC b2940 0.35 -0.5
3,084,345 - yqgC b2940 0.63 -0.1
3,084,471 + -0.3
3,084,632 + -0.9
3,084,632 + -0.1
3,085,886 + +0.0
3,085,886 + +1.0
3,085,886 + +0.8
3,085,896 + -0.8
3,085,984 - -1.3
3,085,984 - -0.4
3,086,143 - -1.3
3,086,233 - +0.0
3,086,330 + -0.5
3,086,330 + -1.0
3,086,370 - +0.5
3,086,372 + +0.6
3,086,373 + +0.7
3,086,482 - galP b2943 0.13 -0.2
3,086,482 - galP b2943 0.13 +0.4
3,086,496 + galP b2943 0.14 +0.0
3,086,660 - galP b2943 0.25 +0.1
3,086,660 - galP b2943 0.25 +0.2
3,086,681 - galP b2943 0.27 -0.5
3,086,681 - galP b2943 0.27 +0.0
3,086,692 - galP b2943 0.28 -0.6
3,086,703 - galP b2943 0.28 +1.2
3,086,757 + galP b2943 0.32 -1.0
3,086,780 - galP b2943 0.34 -0.2
3,086,780 - galP b2943 0.34 +0.1
3,086,797 + galP b2943 0.35 +0.6

Or see this region's nucleotide sequence