Strain Fitness in Bosea sp. OAE506 around ABIE41_RS23650

Experiment: D-Tagatose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS23645 and ABIE41_RS23650 are separated by 99 nucleotidesABIE41_RS23650 and ABIE41_RS23655 overlap by 4 nucleotides ABIE41_RS23645: ABIE41_RS23645 - histidine ammonia-lyase, at 4,872,218 to 4,873,753 _RS23645 ABIE41_RS23650: ABIE41_RS23650 - N-formylglutamate deformylase, at 4,873,853 to 4,874,659 _RS23650 ABIE41_RS23655: ABIE41_RS23655 - urocanate hydratase, at 4,874,656 to 4,876,326 _RS23655 Position (kb) 4873 4874 4875Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4873.058 kb on + strand, within ABIE41_RS23645at 4873.059 kb on - strand, within ABIE41_RS23645at 4873.375 kb on - strand, within ABIE41_RS23645at 4873.416 kb on - strand, within ABIE41_RS23645at 4873.655 kb on + strandat 4873.655 kb on + strandat 4873.656 kb on - strandat 4874.003 kb on + strand, within ABIE41_RS23650at 4874.003 kb on + strand, within ABIE41_RS23650at 4874.003 kb on + strand, within ABIE41_RS23650at 4874.003 kb on + strand, within ABIE41_RS23650at 4874.003 kb on + strand, within ABIE41_RS23650at 4874.004 kb on - strand, within ABIE41_RS23650at 4874.004 kb on - strand, within ABIE41_RS23650at 4874.099 kb on + strand, within ABIE41_RS23650at 4874.131 kb on + strand, within ABIE41_RS23650at 4874.208 kb on - strand, within ABIE41_RS23650at 4874.219 kb on + strand, within ABIE41_RS23650at 4874.271 kb on - strand, within ABIE41_RS23650at 4874.475 kb on - strand, within ABIE41_RS23650at 4874.531 kb on + strand, within ABIE41_RS23650at 4874.531 kb on + strand, within ABIE41_RS23650at 4874.531 kb on + strand, within ABIE41_RS23650at 4874.531 kb on + strand, within ABIE41_RS23650at 4874.531 kb on + strand, within ABIE41_RS23650at 4874.531 kb on + strand, within ABIE41_RS23650at 4874.531 kb on + strand, within ABIE41_RS23650at 4874.531 kb on + strand, within ABIE41_RS23650at 4874.531 kb on + strand, within ABIE41_RS23650at 4874.532 kb on - strand, within ABIE41_RS23650at 4874.532 kb on - strand, within ABIE41_RS23650at 4874.532 kb on - strand, within ABIE41_RS23650at 4874.532 kb on - strand, within ABIE41_RS23650at 4874.532 kb on - strand, within ABIE41_RS23650at 4874.803 kb on + strandat 4874.983 kb on + strand, within ABIE41_RS23655at 4874.984 kb on - strand, within ABIE41_RS23655at 4875.015 kb on + strand, within ABIE41_RS23655at 4875.034 kb on + strand, within ABIE41_RS23655at 4875.035 kb on - strand, within ABIE41_RS23655at 4875.035 kb on - strand, within ABIE41_RS23655at 4875.035 kb on - strand, within ABIE41_RS23655at 4875.064 kb on + strand, within ABIE41_RS23655at 4875.064 kb on + strand, within ABIE41_RS23655at 4875.064 kb on + strand, within ABIE41_RS23655at 4875.065 kb on - strand, within ABIE41_RS23655at 4875.065 kb on - strand, within ABIE41_RS23655at 4875.065 kb on - strand, within ABIE41_RS23655at 4875.065 kb on - strand, within ABIE41_RS23655at 4875.065 kb on - strand, within ABIE41_RS23655at 4875.065 kb on - strand, within ABIE41_RS23655at 4875.065 kb on - strand, within ABIE41_RS23655at 4875.097 kb on + strand, within ABIE41_RS23655at 4875.097 kb on + strand, within ABIE41_RS23655at 4875.098 kb on - strand, within ABIE41_RS23655at 4875.098 kb on - strand, within ABIE41_RS23655at 4875.098 kb on - strand, within ABIE41_RS23655at 4875.098 kb on - strand, within ABIE41_RS23655at 4875.130 kb on + strand, within ABIE41_RS23655at 4875.130 kb on + strand, within ABIE41_RS23655at 4875.231 kb on - strand, within ABIE41_RS23655at 4875.280 kb on + strand, within ABIE41_RS23655at 4875.470 kb on - strand, within ABIE41_RS23655at 4875.617 kb on - strand, within ABIE41_RS23655

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Tagatose (C)
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4,873,058 + ABIE41_RS23645 0.55 +0.2
4,873,059 - ABIE41_RS23645 0.55 +1.6
4,873,375 - ABIE41_RS23645 0.75 -0.4
4,873,416 - ABIE41_RS23645 0.78 +0.7
4,873,655 + -1.5
4,873,655 + +0.3
4,873,656 - +2.5
4,874,003 + ABIE41_RS23650 0.19 -0.8
4,874,003 + ABIE41_RS23650 0.19 +0.5
4,874,003 + ABIE41_RS23650 0.19 -0.1
4,874,003 + ABIE41_RS23650 0.19 -0.3
4,874,003 + ABIE41_RS23650 0.19 -1.1
4,874,004 - ABIE41_RS23650 0.19 -0.7
4,874,004 - ABIE41_RS23650 0.19 +1.5
4,874,099 + ABIE41_RS23650 0.30 +0.3
4,874,131 + ABIE41_RS23650 0.34 +0.5
4,874,208 - ABIE41_RS23650 0.44 -0.3
4,874,219 + ABIE41_RS23650 0.45 -3.4
4,874,271 - ABIE41_RS23650 0.52 +0.1
4,874,475 - ABIE41_RS23650 0.77 -1.1
4,874,531 + ABIE41_RS23650 0.84 -2.4
4,874,531 + ABIE41_RS23650 0.84 -0.7
4,874,531 + ABIE41_RS23650 0.84 +0.3
4,874,531 + ABIE41_RS23650 0.84 +0.9
4,874,531 + ABIE41_RS23650 0.84 +1.1
4,874,531 + ABIE41_RS23650 0.84 -0.1
4,874,531 + ABIE41_RS23650 0.84 -2.2
4,874,531 + ABIE41_RS23650 0.84 -0.3
4,874,531 + ABIE41_RS23650 0.84 +0.7
4,874,532 - ABIE41_RS23650 0.84 -0.3
4,874,532 - ABIE41_RS23650 0.84 -1.0
4,874,532 - ABIE41_RS23650 0.84 -1.0
4,874,532 - ABIE41_RS23650 0.84 -1.5
4,874,532 - ABIE41_RS23650 0.84 -0.7
4,874,803 + -2.4
4,874,983 + ABIE41_RS23655 0.20 -3.3
4,874,984 - ABIE41_RS23655 0.20 -0.1
4,875,015 + ABIE41_RS23655 0.21 -0.2
4,875,034 + ABIE41_RS23655 0.23 +1.2
4,875,035 - ABIE41_RS23655 0.23 -0.5
4,875,035 - ABIE41_RS23655 0.23 -1.4
4,875,035 - ABIE41_RS23655 0.23 +1.2
4,875,064 + ABIE41_RS23655 0.24 -1.5
4,875,064 + ABIE41_RS23655 0.24 +0.8
4,875,064 + ABIE41_RS23655 0.24 +1.0
4,875,065 - ABIE41_RS23655 0.24 -0.2
4,875,065 - ABIE41_RS23655 0.24 +1.3
4,875,065 - ABIE41_RS23655 0.24 -0.5
4,875,065 - ABIE41_RS23655 0.24 +0.6
4,875,065 - ABIE41_RS23655 0.24 +0.2
4,875,065 - ABIE41_RS23655 0.24 -0.4
4,875,065 - ABIE41_RS23655 0.24 +0.2
4,875,097 + ABIE41_RS23655 0.26 +2.8
4,875,097 + ABIE41_RS23655 0.26 +0.3
4,875,098 - ABIE41_RS23655 0.26 -2.0
4,875,098 - ABIE41_RS23655 0.26 +1.9
4,875,098 - ABIE41_RS23655 0.26 +1.4
4,875,098 - ABIE41_RS23655 0.26 -0.7
4,875,130 + ABIE41_RS23655 0.28 -0.4
4,875,130 + ABIE41_RS23655 0.28 +0.5
4,875,231 - ABIE41_RS23655 0.34 +1.3
4,875,280 + ABIE41_RS23655 0.37 -0.9
4,875,470 - ABIE41_RS23655 0.49 +0.2
4,875,617 - ABIE41_RS23655 0.58 +0.4

Or see this region's nucleotide sequence