Experiment: D-Tagatose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS21870 and ABIE41_RS21875 are separated by 79 nucleotides ABIE41_RS21875 and ABIE41_RS21880 overlap by 65 nucleotides ABIE41_RS21880 and ABIE41_RS21885 are separated by 98 nucleotides ABIE41_RS21885 and ABIE41_RS21890 are separated by 4 nucleotides
ABIE41_RS21870: ABIE41_RS21870 - hypothetical protein, at 4,492,548 to 4,498,163
_RS21870
ABIE41_RS21875: ABIE41_RS21875 - carboxymuconolactone decarboxylase family protein, at 4,498,243 to 4,498,641
_RS21875
ABIE41_RS21880: ABIE41_RS21880 - MerR family transcriptional regulator, at 4,498,577 to 4,499,005
_RS21880
ABIE41_RS21885: ABIE41_RS21885 - ABC-type transport auxiliary lipoprotein family protein, at 4,499,104 to 4,499,703
_RS21885
ABIE41_RS21890: ABIE41_RS21890 - MlaD family protein, at 4,499,708 to 4,500,853
_RS21890
Position (kb) 4499
4500 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4498.125 kb on + strand at 4498.126 kb on - strand at 4498.161 kb on + strand at 4498.181 kb on - strand at 4498.314 kb on - strand, within ABIE41_RS21875 at 4498.479 kb on - strand, within ABIE41_RS21875 at 4498.723 kb on + strand, within ABIE41_RS21880 at 4498.890 kb on + strand, within ABIE41_RS21880 at 4498.891 kb on - strand, within ABIE41_RS21880 at 4498.891 kb on - strand, within ABIE41_RS21880 at 4498.947 kb on + strand, within ABIE41_RS21880 at 4498.948 kb on - strand, within ABIE41_RS21880 at 4498.948 kb on - strand, within ABIE41_RS21880 at 4498.948 kb on - strand, within ABIE41_RS21880 at 4499.709 kb on + strand at 4499.724 kb on + strand at 4499.724 kb on + strand at 4499.725 kb on - strand at 4500.143 kb on + strand, within ABIE41_RS21890 at 4500.144 kb on - strand, within ABIE41_RS21890 at 4500.571 kb on + strand, within ABIE41_RS21890 at 4500.572 kb on - strand, within ABIE41_RS21890 at 4500.572 kb on - strand, within ABIE41_RS21890 at 4500.572 kb on - strand, within ABIE41_RS21890
Per-strain Table
Position Strand Gene LocusTag Fraction D-Tagatose (C) remove 4,498,125 + +0.6 4,498,126 - -0.6 4,498,161 + +0.2 4,498,181 - -0.9 4,498,314 - ABIE41_RS21875 0.18 +1.7 4,498,479 - ABIE41_RS21875 0.59 +2.0 4,498,723 + ABIE41_RS21880 0.34 -0.7 4,498,890 + ABIE41_RS21880 0.73 +0.6 4,498,891 - ABIE41_RS21880 0.73 -0.1 4,498,891 - ABIE41_RS21880 0.73 -2.6 4,498,947 + ABIE41_RS21880 0.86 -1.6 4,498,948 - ABIE41_RS21880 0.86 -1.5 4,498,948 - ABIE41_RS21880 0.86 +0.7 4,498,948 - ABIE41_RS21880 0.86 +0.6 4,499,709 + +3.0 4,499,724 + -0.4 4,499,724 + -0.6 4,499,725 - -1.1 4,500,143 + ABIE41_RS21890 0.38 +0.1 4,500,144 - ABIE41_RS21890 0.38 -2.4 4,500,571 + ABIE41_RS21890 0.75 +0.2 4,500,572 - ABIE41_RS21890 0.75 -2.1 4,500,572 - ABIE41_RS21890 0.75 -0.5 4,500,572 - ABIE41_RS21890 0.75 -4.0
Or see this region's nucleotide sequence