Strain Fitness in Bosea sp. OAE506 around ABIE41_RS16700

Experiment: D-Tagatose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS16695 and ABIE41_RS16700 overlap by 4 nucleotidesABIE41_RS16700 and ABIE41_RS16705 overlap by 4 nucleotidesABIE41_RS16705 and ABIE41_RS16710 overlap by 4 nucleotides ABIE41_RS16695: ABIE41_RS16695 - ABC transporter ATP-binding protein, at 3,435,615 to 3,436,637 _RS16695 ABIE41_RS16700: ABIE41_RS16700 - ABC transporter ATP-binding protein, at 3,436,634 to 3,437,614 _RS16700 ABIE41_RS16705: ABIE41_RS16705 - ABC transporter permease, at 3,437,611 to 3,438,519 _RS16705 ABIE41_RS16710: ABIE41_RS16710 - ABC transporter permease, at 3,438,516 to 3,439,493 _RS16710 Position (kb) 3436 3437 3438Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3435.844 kb on + strand, within ABIE41_RS16695at 3435.844 kb on + strand, within ABIE41_RS16695at 3435.845 kb on - strand, within ABIE41_RS16695at 3435.845 kb on - strand, within ABIE41_RS16695at 3435.845 kb on - strand, within ABIE41_RS16695at 3435.907 kb on + strand, within ABIE41_RS16695at 3435.907 kb on + strand, within ABIE41_RS16695at 3435.907 kb on + strand, within ABIE41_RS16695at 3435.907 kb on + strand, within ABIE41_RS16695at 3435.907 kb on + strand, within ABIE41_RS16695at 3435.907 kb on + strand, within ABIE41_RS16695at 3435.907 kb on + strand, within ABIE41_RS16695at 3435.907 kb on + strand, within ABIE41_RS16695at 3435.908 kb on - strand, within ABIE41_RS16695at 3435.908 kb on - strand, within ABIE41_RS16695at 3435.908 kb on - strand, within ABIE41_RS16695at 3435.908 kb on - strand, within ABIE41_RS16695at 3435.908 kb on - strand, within ABIE41_RS16695at 3435.970 kb on + strand, within ABIE41_RS16695at 3435.970 kb on + strand, within ABIE41_RS16695at 3435.970 kb on + strand, within ABIE41_RS16695at 3435.971 kb on - strand, within ABIE41_RS16695at 3436.288 kb on + strand, within ABIE41_RS16695at 3436.289 kb on - strand, within ABIE41_RS16695at 3436.289 kb on - strand, within ABIE41_RS16695at 3436.289 kb on - strand, within ABIE41_RS16695at 3436.289 kb on - strand, within ABIE41_RS16695at 3436.325 kb on - strand, within ABIE41_RS16695at 3436.372 kb on + strand, within ABIE41_RS16695at 3436.372 kb on + strand, within ABIE41_RS16695at 3436.372 kb on + strand, within ABIE41_RS16695at 3436.373 kb on - strand, within ABIE41_RS16695at 3436.674 kb on + strandat 3436.674 kb on + strandat 3436.674 kb on + strandat 3436.675 kb on - strandat 3436.675 kb on - strandat 3436.861 kb on + strand, within ABIE41_RS16700at 3436.862 kb on - strand, within ABIE41_RS16700at 3436.926 kb on + strand, within ABIE41_RS16700at 3436.926 kb on + strand, within ABIE41_RS16700at 3436.926 kb on + strand, within ABIE41_RS16700at 3436.926 kb on + strand, within ABIE41_RS16700at 3436.926 kb on + strand, within ABIE41_RS16700at 3436.926 kb on + strand, within ABIE41_RS16700at 3436.926 kb on + strand, within ABIE41_RS16700at 3436.926 kb on + strand, within ABIE41_RS16700at 3436.927 kb on - strand, within ABIE41_RS16700at 3436.927 kb on - strand, within ABIE41_RS16700at 3436.927 kb on - strand, within ABIE41_RS16700at 3436.927 kb on - strand, within ABIE41_RS16700at 3436.927 kb on - strand, within ABIE41_RS16700at 3436.927 kb on - strand, within ABIE41_RS16700at 3436.927 kb on - strand, within ABIE41_RS16700at 3437.245 kb on + strand, within ABIE41_RS16700at 3437.712 kb on - strand, within ABIE41_RS16705at 3437.712 kb on - strand, within ABIE41_RS16705at 3437.936 kb on + strand, within ABIE41_RS16705at 3437.936 kb on + strand, within ABIE41_RS16705at 3437.936 kb on + strand, within ABIE41_RS16705at 3437.937 kb on - strand, within ABIE41_RS16705at 3437.937 kb on - strand, within ABIE41_RS16705at 3437.937 kb on - strand, within ABIE41_RS16705at 3437.937 kb on - strand, within ABIE41_RS16705at 3437.937 kb on - strand, within ABIE41_RS16705at 3437.984 kb on + strand, within ABIE41_RS16705at 3438.275 kb on + strand, within ABIE41_RS16705at 3438.562 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Tagatose (C)
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3,435,844 + ABIE41_RS16695 0.22 -1.2
3,435,844 + ABIE41_RS16695 0.22 -1.7
3,435,845 - ABIE41_RS16695 0.22 +0.4
3,435,845 - ABIE41_RS16695 0.22 -1.2
3,435,845 - ABIE41_RS16695 0.22 -0.9
3,435,907 + ABIE41_RS16695 0.29 -3.2
3,435,907 + ABIE41_RS16695 0.29 -2.4
3,435,907 + ABIE41_RS16695 0.29 +1.6
3,435,907 + ABIE41_RS16695 0.29 -1.2
3,435,907 + ABIE41_RS16695 0.29 +0.5
3,435,907 + ABIE41_RS16695 0.29 -1.0
3,435,907 + ABIE41_RS16695 0.29 -0.6
3,435,907 + ABIE41_RS16695 0.29 -2.0
3,435,908 - ABIE41_RS16695 0.29 +0.7
3,435,908 - ABIE41_RS16695 0.29 +1.2
3,435,908 - ABIE41_RS16695 0.29 +0.9
3,435,908 - ABIE41_RS16695 0.29 +0.9
3,435,908 - ABIE41_RS16695 0.29 -1.6
3,435,970 + ABIE41_RS16695 0.35 -2.0
3,435,970 + ABIE41_RS16695 0.35 +0.5
3,435,970 + ABIE41_RS16695 0.35 +0.0
3,435,971 - ABIE41_RS16695 0.35 +0.4
3,436,288 + ABIE41_RS16695 0.66 -0.8
3,436,289 - ABIE41_RS16695 0.66 +0.0
3,436,289 - ABIE41_RS16695 0.66 -1.2
3,436,289 - ABIE41_RS16695 0.66 +0.6
3,436,289 - ABIE41_RS16695 0.66 -0.3
3,436,325 - ABIE41_RS16695 0.69 +2.0
3,436,372 + ABIE41_RS16695 0.74 +1.2
3,436,372 + ABIE41_RS16695 0.74 -0.3
3,436,372 + ABIE41_RS16695 0.74 +0.1
3,436,373 - ABIE41_RS16695 0.74 -2.0
3,436,674 + -1.3
3,436,674 + -0.3
3,436,674 + -0.1
3,436,675 - +0.0
3,436,675 - +0.5
3,436,861 + ABIE41_RS16700 0.23 +0.9
3,436,862 - ABIE41_RS16700 0.23 -0.1
3,436,926 + ABIE41_RS16700 0.30 +2.2
3,436,926 + ABIE41_RS16700 0.30 -1.9
3,436,926 + ABIE41_RS16700 0.30 +0.3
3,436,926 + ABIE41_RS16700 0.30 -2.2
3,436,926 + ABIE41_RS16700 0.30 +0.0
3,436,926 + ABIE41_RS16700 0.30 -1.6
3,436,926 + ABIE41_RS16700 0.30 -1.1
3,436,926 + ABIE41_RS16700 0.30 -1.3
3,436,927 - ABIE41_RS16700 0.30 -0.3
3,436,927 - ABIE41_RS16700 0.30 -2.0
3,436,927 - ABIE41_RS16700 0.30 -2.7
3,436,927 - ABIE41_RS16700 0.30 +0.9
3,436,927 - ABIE41_RS16700 0.30 +0.6
3,436,927 - ABIE41_RS16700 0.30 +1.7
3,436,927 - ABIE41_RS16700 0.30 -0.1
3,437,245 + ABIE41_RS16700 0.62 -1.2
3,437,712 - ABIE41_RS16705 0.11 -0.5
3,437,712 - ABIE41_RS16705 0.11 -0.4
3,437,936 + ABIE41_RS16705 0.36 +0.8
3,437,936 + ABIE41_RS16705 0.36 -1.5
3,437,936 + ABIE41_RS16705 0.36 -1.2
3,437,937 - ABIE41_RS16705 0.36 +0.1
3,437,937 - ABIE41_RS16705 0.36 -0.5
3,437,937 - ABIE41_RS16705 0.36 -1.6
3,437,937 - ABIE41_RS16705 0.36 +0.3
3,437,937 - ABIE41_RS16705 0.36 -0.4
3,437,984 + ABIE41_RS16705 0.41 -1.5
3,438,275 + ABIE41_RS16705 0.73 -0.3
3,438,562 + +1.2

Or see this region's nucleotide sequence