Experiment: D-Tagatose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS13120 and ABIE41_RS13125 are separated by 22 nucleotides ABIE41_RS13125 and ABIE41_RS13130 are separated by 199 nucleotides ABIE41_RS13130 and ABIE41_RS13135 are separated by 245 nucleotides
ABIE41_RS13120: ABIE41_RS13120 - YfhO family protein, at 2,690,973 to 2,693,426
_RS13120
ABIE41_RS13125: ABIE41_RS13125 - heme-binding protein, at 2,693,449 to 2,693,877
_RS13125
ABIE41_RS13130: ABIE41_RS13130 - peptidoglycan-binding protein LysM, at 2,694,077 to 2,694,514
_RS13130
ABIE41_RS13135: ABIE41_RS13135 - TRAP transporter substrate-binding protein, at 2,694,760 to 2,695,812
_RS13135
Position (kb)
2694
2695 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2693.639 kb on + strand, within ABIE41_RS13125 at 2693.640 kb on - strand, within ABIE41_RS13125 at 2694.150 kb on + strand, within ABIE41_RS13130 at 2694.150 kb on + strand, within ABIE41_RS13130 at 2694.151 kb on - strand, within ABIE41_RS13130 at 2694.350 kb on + strand, within ABIE41_RS13130 at 2694.350 kb on + strand, within ABIE41_RS13130 at 2694.351 kb on - strand, within ABIE41_RS13130 at 2694.351 kb on - strand, within ABIE41_RS13130 at 2694.422 kb on + strand, within ABIE41_RS13130 at 2694.422 kb on + strand, within ABIE41_RS13130 at 2694.422 kb on + strand, within ABIE41_RS13130 at 2694.422 kb on + strand, within ABIE41_RS13130 at 2694.423 kb on - strand, within ABIE41_RS13130 at 2694.423 kb on - strand, within ABIE41_RS13130 at 2694.682 kb on - strand at 2694.686 kb on + strand at 2694.686 kb on + strand at 2694.687 kb on - strand at 2694.687 kb on - strand at 2694.802 kb on - strand at 2695.154 kb on - strand, within ABIE41_RS13135 at 2695.480 kb on + strand, within ABIE41_RS13135 at 2695.481 kb on - strand, within ABIE41_RS13135
Per-strain Table
Position Strand Gene LocusTag Fraction D-Tagatose (C) remove 2,693,639 + ABIE41_RS13125 0.44 -0.2 2,693,640 - ABIE41_RS13125 0.45 +0.3 2,694,150 + ABIE41_RS13130 0.17 -0.1 2,694,150 + ABIE41_RS13130 0.17 -0.7 2,694,151 - ABIE41_RS13130 0.17 -2.0 2,694,350 + ABIE41_RS13130 0.62 -1.3 2,694,350 + ABIE41_RS13130 0.62 -0.7 2,694,351 - ABIE41_RS13130 0.63 +0.6 2,694,351 - ABIE41_RS13130 0.63 -0.2 2,694,422 + ABIE41_RS13130 0.79 -2.8 2,694,422 + ABIE41_RS13130 0.79 +0.5 2,694,422 + ABIE41_RS13130 0.79 -1.7 2,694,422 + ABIE41_RS13130 0.79 -2.8 2,694,423 - ABIE41_RS13130 0.79 +0.1 2,694,423 - ABIE41_RS13130 0.79 +0.1 2,694,682 - -0.3 2,694,686 + -0.9 2,694,686 + +3.6 2,694,687 - +0.4 2,694,687 - -0.1 2,694,802 - -0.6 2,695,154 - ABIE41_RS13135 0.37 -3.7 2,695,480 + ABIE41_RS13135 0.68 -0.6 2,695,481 - ABIE41_RS13135 0.68 +2.2
Or see this region's nucleotide sequence