Strain Fitness in Bosea sp. OAE506 around ABIE41_RS11715

Experiment: D-Tagatose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS11710 and ABIE41_RS11715 are separated by 46 nucleotidesABIE41_RS11715 and ABIE41_RS11720 are separated by 13 nucleotidesABIE41_RS11720 and ABIE41_RS11725 are separated by 61 nucleotides ABIE41_RS11710: ABIE41_RS11710 - MBL fold metallo-hydrolase, at 2,402,416 to 2,403,474 _RS11710 ABIE41_RS11715: ABIE41_RS11715 - class I SAM-dependent methyltransferase, at 2,403,521 to 2,404,120 _RS11715 ABIE41_RS11720: ABIE41_RS11720 - LysE family translocator, at 2,404,134 to 2,404,760 _RS11720 ABIE41_RS11725: ABIE41_RS11725 - CAP domain-containing protein, at 2,404,822 to 2,405,385 _RS11725 Position (kb) 2403 2404 2405Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2402.646 kb on - strand, within ABIE41_RS11710at 2402.705 kb on + strand, within ABIE41_RS11710at 2402.828 kb on + strand, within ABIE41_RS11710at 2402.829 kb on - strand, within ABIE41_RS11710at 2402.829 kb on - strand, within ABIE41_RS11710at 2402.829 kb on - strand, within ABIE41_RS11710at 2403.011 kb on + strand, within ABIE41_RS11710at 2403.012 kb on - strand, within ABIE41_RS11710at 2403.125 kb on + strand, within ABIE41_RS11710at 2403.125 kb on + strand, within ABIE41_RS11710at 2403.126 kb on - strand, within ABIE41_RS11710at 2403.245 kb on + strand, within ABIE41_RS11710at 2403.374 kb on + strandat 2403.374 kb on + strandat 2403.374 kb on + strandat 2403.374 kb on + strandat 2403.375 kb on - strandat 2403.375 kb on - strandat 2403.375 kb on - strandat 2403.377 kb on + strandat 2403.377 kb on + strandat 2403.377 kb on + strandat 2403.378 kb on - strandat 2403.378 kb on - strandat 2403.627 kb on + strand, within ABIE41_RS11715at 2403.658 kb on - strand, within ABIE41_RS11715at 2403.658 kb on - strand, within ABIE41_RS11715at 2403.667 kb on - strand, within ABIE41_RS11715at 2403.717 kb on + strand, within ABIE41_RS11715at 2403.717 kb on + strand, within ABIE41_RS11715at 2403.718 kb on - strand, within ABIE41_RS11715at 2403.718 kb on - strand, within ABIE41_RS11715at 2403.718 kb on - strand, within ABIE41_RS11715at 2404.065 kb on + strandat 2404.066 kb on - strandat 2404.086 kb on + strandat 2404.086 kb on + strandat 2404.087 kb on - strandat 2404.185 kb on + strandat 2404.186 kb on - strandat 2404.301 kb on - strand, within ABIE41_RS11720at 2404.516 kb on + strand, within ABIE41_RS11720at 2404.672 kb on + strand, within ABIE41_RS11720at 2404.814 kb on - strandat 2404.925 kb on + strand, within ABIE41_RS11725at 2405.042 kb on + strand, within ABIE41_RS11725at 2405.043 kb on - strand, within ABIE41_RS11725

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Tagatose (C)
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2,402,646 - ABIE41_RS11710 0.22 -0.5
2,402,705 + ABIE41_RS11710 0.27 -0.9
2,402,828 + ABIE41_RS11710 0.39 -1.4
2,402,829 - ABIE41_RS11710 0.39 -2.3
2,402,829 - ABIE41_RS11710 0.39 -0.6
2,402,829 - ABIE41_RS11710 0.39 -0.4
2,403,011 + ABIE41_RS11710 0.56 +0.5
2,403,012 - ABIE41_RS11710 0.56 -0.0
2,403,125 + ABIE41_RS11710 0.67 +0.2
2,403,125 + ABIE41_RS11710 0.67 -2.3
2,403,126 - ABIE41_RS11710 0.67 +0.1
2,403,245 + ABIE41_RS11710 0.78 -3.7
2,403,374 + +0.5
2,403,374 + +1.8
2,403,374 + +1.0
2,403,374 + -0.7
2,403,375 - +1.3
2,403,375 - +1.9
2,403,375 - -1.2
2,403,377 + +1.4
2,403,377 + +0.1
2,403,377 + -0.9
2,403,378 - +1.3
2,403,378 - -1.5
2,403,627 + ABIE41_RS11715 0.18 -0.5
2,403,658 - ABIE41_RS11715 0.23 -0.3
2,403,658 - ABIE41_RS11715 0.23 -0.5
2,403,667 - ABIE41_RS11715 0.24 +2.1
2,403,717 + ABIE41_RS11715 0.33 +0.1
2,403,717 + ABIE41_RS11715 0.33 +0.0
2,403,718 - ABIE41_RS11715 0.33 +1.1
2,403,718 - ABIE41_RS11715 0.33 -0.5
2,403,718 - ABIE41_RS11715 0.33 -0.1
2,404,065 + -0.0
2,404,066 - +0.6
2,404,086 + -0.7
2,404,086 + +2.1
2,404,087 - +0.5
2,404,185 + -2.6
2,404,186 - +0.6
2,404,301 - ABIE41_RS11720 0.27 +0.4
2,404,516 + ABIE41_RS11720 0.61 -2.9
2,404,672 + ABIE41_RS11720 0.86 +1.6
2,404,814 - +1.0
2,404,925 + ABIE41_RS11725 0.18 -0.1
2,405,042 + ABIE41_RS11725 0.39 -0.1
2,405,043 - ABIE41_RS11725 0.39 +0.5

Or see this region's nucleotide sequence