Strain Fitness in Bosea sp. OAE506 around ABIE41_RS01590

Experiment: D-Tagatose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS01585 and ABIE41_RS01590 overlap by 7 nucleotidesABIE41_RS01590 and ABIE41_RS01595 are separated by 13 nucleotides ABIE41_RS01585: ABIE41_RS01585 - LysR substrate-binding domain-containing protein, at 315,968 to 316,885 _RS01585 ABIE41_RS01590: ABIE41_RS01590 - efflux transporter outer membrane subunit, at 316,879 to 318,402 _RS01590 ABIE41_RS01595: ABIE41_RS01595 - efflux RND transporter permease subunit, at 318,416 to 321,559 _RS01595 Position (kb) 316 317 318 319Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 315.940 kb on + strandat 315.940 kb on + strandat 315.941 kb on - strandat 316.005 kb on + strandat 316.005 kb on + strandat 316.005 kb on + strandat 316.005 kb on + strandat 316.005 kb on + strandat 316.005 kb on + strandat 316.045 kb on - strandat 316.048 kb on + strandat 316.048 kb on + strandat 316.049 kb on - strandat 316.049 kb on - strandat 316.091 kb on + strand, within ABIE41_RS01585at 316.091 kb on + strand, within ABIE41_RS01585at 316.091 kb on + strand, within ABIE41_RS01585at 316.091 kb on + strand, within ABIE41_RS01585at 316.091 kb on + strand, within ABIE41_RS01585at 316.092 kb on - strand, within ABIE41_RS01585at 316.092 kb on - strand, within ABIE41_RS01585at 316.092 kb on - strand, within ABIE41_RS01585at 316.092 kb on - strand, within ABIE41_RS01585at 316.092 kb on - strand, within ABIE41_RS01585at 316.092 kb on - strand, within ABIE41_RS01585at 316.162 kb on - strand, within ABIE41_RS01585at 316.163 kb on + strand, within ABIE41_RS01585at 316.164 kb on - strand, within ABIE41_RS01585at 316.273 kb on + strand, within ABIE41_RS01585at 316.274 kb on - strand, within ABIE41_RS01585at 316.307 kb on + strand, within ABIE41_RS01585at 316.307 kb on + strand, within ABIE41_RS01585at 316.307 kb on + strand, within ABIE41_RS01585at 316.308 kb on - strand, within ABIE41_RS01585at 316.344 kb on - strand, within ABIE41_RS01585at 316.344 kb on - strand, within ABIE41_RS01585at 316.413 kb on - strand, within ABIE41_RS01585at 316.433 kb on - strand, within ABIE41_RS01585at 316.433 kb on - strand, within ABIE41_RS01585at 316.433 kb on - strand, within ABIE41_RS01585at 316.433 kb on - strand, within ABIE41_RS01585at 316.697 kb on + strand, within ABIE41_RS01585at 316.760 kb on + strand, within ABIE41_RS01585at 316.760 kb on + strand, within ABIE41_RS01585at 316.760 kb on + strand, within ABIE41_RS01585at 316.760 kb on + strand, within ABIE41_RS01585at 316.760 kb on + strand, within ABIE41_RS01585at 316.883 kb on + strandat 317.039 kb on + strand, within ABIE41_RS01590at 317.040 kb on - strand, within ABIE41_RS01590at 317.093 kb on + strand, within ABIE41_RS01590at 317.093 kb on + strand, within ABIE41_RS01590at 317.093 kb on + strand, within ABIE41_RS01590at 317.093 kb on + strand, within ABIE41_RS01590at 317.094 kb on - strand, within ABIE41_RS01590at 317.094 kb on - strand, within ABIE41_RS01590at 317.604 kb on + strand, within ABIE41_RS01590at 317.630 kb on + strand, within ABIE41_RS01590at 317.630 kb on + strand, within ABIE41_RS01590at 317.631 kb on - strand, within ABIE41_RS01590at 317.631 kb on - strand, within ABIE41_RS01590at 317.631 kb on - strand, within ABIE41_RS01590at 317.631 kb on - strand, within ABIE41_RS01590at 317.631 kb on - strand, within ABIE41_RS01590at 317.816 kb on + strand, within ABIE41_RS01590at 317.816 kb on + strand, within ABIE41_RS01590at 317.816 kb on + strand, within ABIE41_RS01590at 317.816 kb on + strand, within ABIE41_RS01590at 317.816 kb on + strand, within ABIE41_RS01590at 317.817 kb on - strand, within ABIE41_RS01590at 317.817 kb on - strand, within ABIE41_RS01590at 317.817 kb on - strand, within ABIE41_RS01590at 317.817 kb on - strand, within ABIE41_RS01590at 317.817 kb on - strand, within ABIE41_RS01590at 317.817 kb on - strand, within ABIE41_RS01590at 317.817 kb on - strand, within ABIE41_RS01590at 317.817 kb on - strand, within ABIE41_RS01590at 317.817 kb on - strand, within ABIE41_RS01590at 317.817 kb on - strand, within ABIE41_RS01590at 317.817 kb on - strand, within ABIE41_RS01590at 317.888 kb on + strand, within ABIE41_RS01590at 317.888 kb on + strand, within ABIE41_RS01590at 317.888 kb on + strand, within ABIE41_RS01590at 317.889 kb on - strand, within ABIE41_RS01590at 317.889 kb on - strand, within ABIE41_RS01590at 317.889 kb on - strand, within ABIE41_RS01590at 317.912 kb on + strand, within ABIE41_RS01590at 317.913 kb on - strand, within ABIE41_RS01590at 317.913 kb on - strand, within ABIE41_RS01590at 317.913 kb on - strand, within ABIE41_RS01590at 317.963 kb on + strand, within ABIE41_RS01590at 317.964 kb on - strand, within ABIE41_RS01590at 318.275 kb on + strandat 318.275 kb on + strandat 318.276 kb on - strandat 318.276 kb on - strandat 318.276 kb on - strandat 318.498 kb on + strandat 318.498 kb on + strandat 318.498 kb on + strandat 318.498 kb on + strandat 318.498 kb on + strandat 318.498 kb on + strandat 318.498 kb on + strandat 318.498 kb on + strandat 318.498 kb on + strandat 318.499 kb on - strandat 318.499 kb on - strandat 318.499 kb on - strandat 318.499 kb on - strandat 318.499 kb on - strandat 318.499 kb on - strandat 318.499 kb on - strandat 318.628 kb on + strandat 318.628 kb on + strandat 318.628 kb on + strandat 318.795 kb on + strand, within ABIE41_RS01595at 318.796 kb on - strand, within ABIE41_RS01595at 318.796 kb on - strand, within ABIE41_RS01595at 318.897 kb on + strand, within ABIE41_RS01595at 318.897 kb on + strand, within ABIE41_RS01595at 318.897 kb on + strand, within ABIE41_RS01595at 318.897 kb on + strand, within ABIE41_RS01595at 318.981 kb on + strand, within ABIE41_RS01595at 318.982 kb on - strand, within ABIE41_RS01595at 319.116 kb on + strand, within ABIE41_RS01595at 319.117 kb on - strand, within ABIE41_RS01595at 319.117 kb on - strand, within ABIE41_RS01595at 319.140 kb on + strand, within ABIE41_RS01595at 319.140 kb on + strand, within ABIE41_RS01595at 319.141 kb on - strand, within ABIE41_RS01595at 319.141 kb on - strand, within ABIE41_RS01595at 319.141 kb on - strand, within ABIE41_RS01595at 319.203 kb on + strand, within ABIE41_RS01595at 319.203 kb on + strand, within ABIE41_RS01595at 319.203 kb on + strand, within ABIE41_RS01595at 319.203 kb on + strand, within ABIE41_RS01595at 319.203 kb on + strand, within ABIE41_RS01595at 319.204 kb on - strand, within ABIE41_RS01595at 319.204 kb on - strand, within ABIE41_RS01595at 319.204 kb on - strand, within ABIE41_RS01595at 319.204 kb on - strand, within ABIE41_RS01595at 319.204 kb on - strand, within ABIE41_RS01595at 319.204 kb on - strand, within ABIE41_RS01595at 319.204 kb on - strand, within ABIE41_RS01595at 319.204 kb on - strand, within ABIE41_RS01595at 319.257 kb on + strand, within ABIE41_RS01595at 319.257 kb on + strand, within ABIE41_RS01595at 319.257 kb on + strand, within ABIE41_RS01595at 319.257 kb on + strand, within ABIE41_RS01595at 319.258 kb on - strand, within ABIE41_RS01595at 319.258 kb on - strand, within ABIE41_RS01595at 319.299 kb on + strand, within ABIE41_RS01595at 319.299 kb on + strand, within ABIE41_RS01595at 319.299 kb on + strand, within ABIE41_RS01595at 319.299 kb on + strand, within ABIE41_RS01595at 319.300 kb on - strand, within ABIE41_RS01595at 319.300 kb on - strand, within ABIE41_RS01595at 319.300 kb on - strand, within ABIE41_RS01595at 319.392 kb on + strand, within ABIE41_RS01595at 319.392 kb on + strand, within ABIE41_RS01595at 319.393 kb on - strand, within ABIE41_RS01595at 319.393 kb on - strand, within ABIE41_RS01595

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Tagatose (C)
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315,940 + +0.6
315,940 + -0.7
315,941 - -0.2
316,005 + +0.6
316,005 + -0.1
316,005 + -0.1
316,005 + -0.5
316,005 + +1.9
316,005 + +1.1
316,045 - -1.6
316,048 + +0.9
316,048 + -0.4
316,049 - -1.1
316,049 - -0.2
316,091 + ABIE41_RS01585 0.13 -0.2
316,091 + ABIE41_RS01585 0.13 +1.5
316,091 + ABIE41_RS01585 0.13 -1.2
316,091 + ABIE41_RS01585 0.13 -2.5
316,091 + ABIE41_RS01585 0.13 +1.0
316,092 - ABIE41_RS01585 0.14 +0.8
316,092 - ABIE41_RS01585 0.14 -0.5
316,092 - ABIE41_RS01585 0.14 -3.3
316,092 - ABIE41_RS01585 0.14 -0.0
316,092 - ABIE41_RS01585 0.14 -2.1
316,092 - ABIE41_RS01585 0.14 -0.6
316,162 - ABIE41_RS01585 0.21 -2.3
316,163 + ABIE41_RS01585 0.21 -0.7
316,164 - ABIE41_RS01585 0.21 -0.3
316,273 + ABIE41_RS01585 0.33 -0.2
316,274 - ABIE41_RS01585 0.33 -1.1
316,307 + ABIE41_RS01585 0.37 +0.7
316,307 + ABIE41_RS01585 0.37 -0.2
316,307 + ABIE41_RS01585 0.37 -0.2
316,308 - ABIE41_RS01585 0.37 +1.1
316,344 - ABIE41_RS01585 0.41 -0.6
316,344 - ABIE41_RS01585 0.41 +1.2
316,413 - ABIE41_RS01585 0.48 -3.3
316,433 - ABIE41_RS01585 0.51 +1.6
316,433 - ABIE41_RS01585 0.51 +0.5
316,433 - ABIE41_RS01585 0.51 -0.2
316,433 - ABIE41_RS01585 0.51 +0.6
316,697 + ABIE41_RS01585 0.79 -0.5
316,760 + ABIE41_RS01585 0.86 +0.3
316,760 + ABIE41_RS01585 0.86 +1.8
316,760 + ABIE41_RS01585 0.86 +0.0
316,760 + ABIE41_RS01585 0.86 +0.5
316,760 + ABIE41_RS01585 0.86 +0.3
316,883 + -0.2
317,039 + ABIE41_RS01590 0.10 +0.1
317,040 - ABIE41_RS01590 0.11 -0.8
317,093 + ABIE41_RS01590 0.14 +0.1
317,093 + ABIE41_RS01590 0.14 -2.6
317,093 + ABIE41_RS01590 0.14 -1.2
317,093 + ABIE41_RS01590 0.14 -2.0
317,094 - ABIE41_RS01590 0.14 +0.8
317,094 - ABIE41_RS01590 0.14 +0.7
317,604 + ABIE41_RS01590 0.48 +0.3
317,630 + ABIE41_RS01590 0.49 +1.0
317,630 + ABIE41_RS01590 0.49 -2.8
317,631 - ABIE41_RS01590 0.49 -1.0
317,631 - ABIE41_RS01590 0.49 +2.4
317,631 - ABIE41_RS01590 0.49 +0.3
317,631 - ABIE41_RS01590 0.49 +2.4
317,631 - ABIE41_RS01590 0.49 -1.7
317,816 + ABIE41_RS01590 0.61 -2.0
317,816 + ABIE41_RS01590 0.61 -0.9
317,816 + ABIE41_RS01590 0.61 -1.8
317,816 + ABIE41_RS01590 0.61 -1.5
317,816 + ABIE41_RS01590 0.61 -0.7
317,817 - ABIE41_RS01590 0.62 +1.4
317,817 - ABIE41_RS01590 0.62 +0.4
317,817 - ABIE41_RS01590 0.62 -0.0
317,817 - ABIE41_RS01590 0.62 -1.1
317,817 - ABIE41_RS01590 0.62 +0.2
317,817 - ABIE41_RS01590 0.62 -1.7
317,817 - ABIE41_RS01590 0.62 -1.1
317,817 - ABIE41_RS01590 0.62 -1.2
317,817 - ABIE41_RS01590 0.62 +0.5
317,817 - ABIE41_RS01590 0.62 +0.8
317,817 - ABIE41_RS01590 0.62 +0.7
317,888 + ABIE41_RS01590 0.66 -0.8
317,888 + ABIE41_RS01590 0.66 +0.8
317,888 + ABIE41_RS01590 0.66 +0.5
317,889 - ABIE41_RS01590 0.66 +0.1
317,889 - ABIE41_RS01590 0.66 +1.8
317,889 - ABIE41_RS01590 0.66 -2.4
317,912 + ABIE41_RS01590 0.68 -0.9
317,913 - ABIE41_RS01590 0.68 +0.8
317,913 - ABIE41_RS01590 0.68 -1.8
317,913 - ABIE41_RS01590 0.68 +0.7
317,963 + ABIE41_RS01590 0.71 -0.5
317,964 - ABIE41_RS01590 0.71 +1.8
318,275 + +1.0
318,275 + -0.9
318,276 - +0.7
318,276 - -0.1
318,276 - +1.7
318,498 + -0.7
318,498 + +1.9
318,498 + -0.1
318,498 + -0.5
318,498 + -0.1
318,498 + +1.2
318,498 + -0.7
318,498 + +0.5
318,498 + -0.9
318,499 - -1.0
318,499 - +0.1
318,499 - -0.3
318,499 - +0.2
318,499 - -0.2
318,499 - -1.9
318,499 - +0.2
318,628 + -1.8
318,628 + +1.1
318,628 + +0.5
318,795 + ABIE41_RS01595 0.12 -0.9
318,796 - ABIE41_RS01595 0.12 +0.7
318,796 - ABIE41_RS01595 0.12 +1.9
318,897 + ABIE41_RS01595 0.15 -0.0
318,897 + ABIE41_RS01595 0.15 +2.1
318,897 + ABIE41_RS01595 0.15 -0.9
318,897 + ABIE41_RS01595 0.15 +2.4
318,981 + ABIE41_RS01595 0.18 +0.1
318,982 - ABIE41_RS01595 0.18 -0.0
319,116 + ABIE41_RS01595 0.22 -0.7
319,117 - ABIE41_RS01595 0.22 +2.1
319,117 - ABIE41_RS01595 0.22 +3.1
319,140 + ABIE41_RS01595 0.23 +0.1
319,140 + ABIE41_RS01595 0.23 -1.1
319,141 - ABIE41_RS01595 0.23 -2.6
319,141 - ABIE41_RS01595 0.23 +0.9
319,141 - ABIE41_RS01595 0.23 -0.8
319,203 + ABIE41_RS01595 0.25 -0.2
319,203 + ABIE41_RS01595 0.25 -0.1
319,203 + ABIE41_RS01595 0.25 +2.1
319,203 + ABIE41_RS01595 0.25 -0.9
319,203 + ABIE41_RS01595 0.25 +0.2
319,204 - ABIE41_RS01595 0.25 -0.0
319,204 - ABIE41_RS01595 0.25 -0.9
319,204 - ABIE41_RS01595 0.25 +0.1
319,204 - ABIE41_RS01595 0.25 +0.8
319,204 - ABIE41_RS01595 0.25 +1.1
319,204 - ABIE41_RS01595 0.25 +0.7
319,204 - ABIE41_RS01595 0.25 +0.2
319,204 - ABIE41_RS01595 0.25 -1.2
319,257 + ABIE41_RS01595 0.27 -1.0
319,257 + ABIE41_RS01595 0.27 -1.4
319,257 + ABIE41_RS01595 0.27 -0.3
319,257 + ABIE41_RS01595 0.27 -0.3
319,258 - ABIE41_RS01595 0.27 +0.3
319,258 - ABIE41_RS01595 0.27 +0.2
319,299 + ABIE41_RS01595 0.28 +1.1
319,299 + ABIE41_RS01595 0.28 -0.9
319,299 + ABIE41_RS01595 0.28 +0.2
319,299 + ABIE41_RS01595 0.28 -0.7
319,300 - ABIE41_RS01595 0.28 +2.2
319,300 - ABIE41_RS01595 0.28 -2.0
319,300 - ABIE41_RS01595 0.28 -2.5
319,392 + ABIE41_RS01595 0.31 -1.5
319,392 + ABIE41_RS01595 0.31 -0.9
319,393 - ABIE41_RS01595 0.31 +0.3
319,393 - ABIE41_RS01595 0.31 -0.2

Or see this region's nucleotide sequence