Strain Fitness in Bosea sp. OAE506 around ABIE41_RS16890

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS16885 and ABIE41_RS16890 are separated by 303 nucleotidesABIE41_RS16890 and ABIE41_RS16895 are separated by 93 nucleotides ABIE41_RS16885: ABIE41_RS16885 - NAD(P)H-hydrate dehydratase, at 3,478,365 to 3,479,870 _RS16885 ABIE41_RS16890: ABIE41_RS16890 - P-II family nitrogen regulator, at 3,480,174 to 3,480,512 _RS16890 ABIE41_RS16895: ABIE41_RS16895 - type I glutamate--ammonia ligase, at 3,480,606 to 3,482,015 _RS16895 Position (kb) 3480 3481Strain fitness (log2 ratio) -2 -1 0 1at 3479.226 kb on - strand, within ABIE41_RS16885at 3479.226 kb on - strand, within ABIE41_RS16885at 3479.622 kb on + strand, within ABIE41_RS16885at 3479.951 kb on + strandat 3480.030 kb on + strandat 3480.553 kb on + strandat 3480.590 kb on + strandat 3480.590 kb on + strandat 3480.590 kb on + strandat 3480.590 kb on + strandat 3480.590 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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3,479,226 - ABIE41_RS16885 0.57 -0.2
3,479,226 - ABIE41_RS16885 0.57 -1.9
3,479,622 + ABIE41_RS16885 0.83 -0.3
3,479,951 + +0.3
3,480,030 + -2.1
3,480,553 + -0.8
3,480,590 + -1.0
3,480,590 + +0.6
3,480,590 + -0.3
3,480,590 + +0.1
3,480,590 + -0.4

Or see this region's nucleotide sequence