Strain Fitness in Bosea sp. OAE506 around ABIE41_RS14135

Experiment: D-Mannose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS14125 and ABIE41_RS14130 are separated by 19 nucleotidesABIE41_RS14130 and ABIE41_RS14135 overlap by 1 nucleotidesABIE41_RS14135 and ABIE41_RS14140 are separated by 194 nucleotides ABIE41_RS14125: ABIE41_RS14125 - heavy-metal-associated domain-containing protein, at 2,895,225 to 2,895,431 _RS14125 ABIE41_RS14130: ABIE41_RS14130 - CoA ester lyase, at 2,895,451 to 2,896,329 _RS14130 ABIE41_RS14135: ABIE41_RS14135 - MaoC family dehydratase, at 2,896,329 to 2,896,826 _RS14135 ABIE41_RS14140: ABIE41_RS14140 - lytic transglycosylase domain-containing protein, at 2,897,021 to 2,898,100 _RS14140 Position (kb) 2896 2897Strain fitness (log2 ratio) -2 -1 0 1 2at 2896.414 kb on + strand, within ABIE41_RS14135at 2896.789 kb on + strandat 2896.790 kb on - strandat 2896.790 kb on - strandat 2896.790 kb on - strandat 2896.790 kb on - strandat 2896.790 kb on - strandat 2896.790 kb on - strandat 2896.862 kb on + strandat 2896.862 kb on + strandat 2896.863 kb on - strandat 2896.863 kb on - strandat 2896.942 kb on - strandat 2897.020 kb on + strandat 2897.020 kb on + strandat 2897.021 kb on - strandat 2897.021 kb on - strandat 2897.021 kb on - strandat 2897.021 kb on - strandat 2897.021 kb on - strandat 2897.021 kb on - strandat 2897.271 kb on - strand, within ABIE41_RS14140at 2897.453 kb on + strand, within ABIE41_RS14140at 2897.453 kb on + strand, within ABIE41_RS14140at 2897.453 kb on + strand, within ABIE41_RS14140at 2897.453 kb on + strand, within ABIE41_RS14140at 2897.453 kb on + strand, within ABIE41_RS14140at 2897.453 kb on + strand, within ABIE41_RS14140at 2897.454 kb on - strand, within ABIE41_RS14140at 2897.454 kb on - strand, within ABIE41_RS14140at 2897.454 kb on - strand, within ABIE41_RS14140at 2897.454 kb on - strand, within ABIE41_RS14140at 2897.454 kb on - strand, within ABIE41_RS14140at 2897.454 kb on - strand, within ABIE41_RS14140at 2897.615 kb on + strand, within ABIE41_RS14140at 2897.616 kb on - strand, within ABIE41_RS14140

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
remove
2,896,414 + ABIE41_RS14135 0.17 +0.8
2,896,789 + +0.5
2,896,790 - -2.3
2,896,790 - -1.2
2,896,790 - -2.0
2,896,790 - -0.3
2,896,790 - +0.4
2,896,790 - +0.4
2,896,862 + -0.4
2,896,862 + +0.7
2,896,863 - +0.2
2,896,863 - +0.0
2,896,942 - -0.4
2,897,020 + +2.3
2,897,020 + +0.8
2,897,021 - +0.1
2,897,021 - -0.1
2,897,021 - -0.0
2,897,021 - +1.1
2,897,021 - +0.5
2,897,021 - -0.1
2,897,271 - ABIE41_RS14140 0.23 -0.2
2,897,453 + ABIE41_RS14140 0.40 -0.4
2,897,453 + ABIE41_RS14140 0.40 -0.1
2,897,453 + ABIE41_RS14140 0.40 -0.1
2,897,453 + ABIE41_RS14140 0.40 -0.9
2,897,453 + ABIE41_RS14140 0.40 -0.1
2,897,453 + ABIE41_RS14140 0.40 -1.5
2,897,454 - ABIE41_RS14140 0.40 +0.4
2,897,454 - ABIE41_RS14140 0.40 +1.6
2,897,454 - ABIE41_RS14140 0.40 +0.1
2,897,454 - ABIE41_RS14140 0.40 -1.7
2,897,454 - ABIE41_RS14140 0.40 -0.0
2,897,454 - ABIE41_RS14140 0.40 -0.8
2,897,615 + ABIE41_RS14140 0.55 -0.7
2,897,616 - ABIE41_RS14140 0.55 -0.0

Or see this region's nucleotide sequence