Strain Fitness in Bosea sp. OAE506 around ABIE41_RS08780

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS08775 and ABIE41_RS08780 are separated by 162 nucleotidesABIE41_RS08780 and ABIE41_RS08785 are separated by 125 nucleotides ABIE41_RS08775: ABIE41_RS08775 - phosphoglycerate dehydrogenase, at 1,818,299 to 1,819,888 _RS08775 ABIE41_RS08780: ABIE41_RS08780 - phosphoserine transaminase, at 1,820,051 to 1,821,229 _RS08780 ABIE41_RS08785: ABIE41_RS08785 - Swt1 family HEPN domain-containing protein, at 1,821,355 to 1,821,909 _RS08785 Position (kb) 1820 1821 1822Strain fitness (log2 ratio) -2 -1 0 1 2at 1819.362 kb on + strand, within ABIE41_RS08775at 1819.362 kb on + strand, within ABIE41_RS08775at 1819.363 kb on - strand, within ABIE41_RS08775at 1819.371 kb on + strand, within ABIE41_RS08775at 1819.372 kb on - strand, within ABIE41_RS08775at 1819.426 kb on + strand, within ABIE41_RS08775at 1820.058 kb on + strandat 1820.859 kb on + strand, within ABIE41_RS08780at 1821.293 kb on - strandat 1821.638 kb on - strand, within ABIE41_RS08785at 1821.838 kb on + strand, within ABIE41_RS08785at 1821.839 kb on - strand, within ABIE41_RS08785at 1821.956 kb on - strandat 1821.983 kb on - strandat 1822.027 kb on + strandat 1822.040 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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1,819,362 + ABIE41_RS08775 0.67 +1.1
1,819,362 + ABIE41_RS08775 0.67 -1.4
1,819,363 - ABIE41_RS08775 0.67 -0.9
1,819,371 + ABIE41_RS08775 0.67 -0.6
1,819,372 - ABIE41_RS08775 0.67 -2.7
1,819,426 + ABIE41_RS08775 0.71 -0.3
1,820,058 + -0.3
1,820,859 + ABIE41_RS08780 0.69 +0.5
1,821,293 - +0.9
1,821,638 - ABIE41_RS08785 0.51 +0.1
1,821,838 + ABIE41_RS08785 0.87 +2.1
1,821,839 - ABIE41_RS08785 0.87 +0.1
1,821,956 - -1.7
1,821,983 - +0.3
1,822,027 + +0.9
1,822,040 - +0.8

Or see this region's nucleotide sequence