Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS03780 and ABIE41_RS03785 are separated by 7 nucleotides ABIE41_RS03785 and ABIE41_RS03790 are separated by 61 nucleotides ABIE41_RS03790 and ABIE41_RS03795 are separated by 233 nucleotides
ABIE41_RS03780: ABIE41_RS03780 - hypothetical protein, at 788,298 to 789,191
_RS03780
ABIE41_RS03785: ABIE41_RS03785 - hypothetical protein, at 789,199 to 789,321
_RS03785
ABIE41_RS03790: ABIE41_RS03790 - L,D-transpeptidase, at 789,383 to 789,850
_RS03790
ABIE41_RS03795: ABIE41_RS03795 - sulfite exporter TauE/SafE family protein, at 790,084 to 790,836
_RS03795
Position (kb) 789
790 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 788.622 kb on - strand, within ABIE41_RS03780 at 788.661 kb on + strand, within ABIE41_RS03780 at 788.662 kb on - strand, within ABIE41_RS03780 at 788.662 kb on - strand, within ABIE41_RS03780 at 788.749 kb on + strand, within ABIE41_RS03780 at 788.754 kb on + strand, within ABIE41_RS03780 at 788.754 kb on + strand, within ABIE41_RS03780 at 788.754 kb on + strand, within ABIE41_RS03780 at 788.889 kb on + strand, within ABIE41_RS03780 at 788.890 kb on - strand, within ABIE41_RS03780 at 789.224 kb on + strand, within ABIE41_RS03785 at 789.224 kb on + strand, within ABIE41_RS03785 at 789.224 kb on + strand, within ABIE41_RS03785 at 789.225 kb on - strand, within ABIE41_RS03785 at 789.225 kb on - strand, within ABIE41_RS03785 at 789.225 kb on - strand, within ABIE41_RS03785 at 789.225 kb on - strand, within ABIE41_RS03785 at 789.227 kb on + strand, within ABIE41_RS03785 at 789.257 kb on + strand, within ABIE41_RS03785 at 789.576 kb on + strand, within ABIE41_RS03790 at 789.577 kb on - strand, within ABIE41_RS03790 at 789.618 kb on + strand, within ABIE41_RS03790 at 789.618 kb on + strand, within ABIE41_RS03790 at 789.630 kb on + strand, within ABIE41_RS03790 at 789.631 kb on - strand, within ABIE41_RS03790 at 789.714 kb on + strand, within ABIE41_RS03790 at 789.714 kb on + strand, within ABIE41_RS03790 at 789.715 kb on - strand, within ABIE41_RS03790 at 789.715 kb on - strand, within ABIE41_RS03790 at 789.715 kb on - strand, within ABIE41_RS03790 at 789.715 kb on - strand, within ABIE41_RS03790 at 789.964 kb on + strand at 789.965 kb on - strand at 789.965 kb on - strand at 789.965 kb on - strand at 790.044 kb on + strand at 790.044 kb on + strand at 790.044 kb on + strand at 790.044 kb on + strand at 790.044 kb on + strand at 790.045 kb on - strand at 790.045 kb on - strand at 790.045 kb on - strand at 790.291 kb on + strand, within ABIE41_RS03795 at 790.291 kb on + strand, within ABIE41_RS03795 at 790.291 kb on + strand, within ABIE41_RS03795 at 790.291 kb on + strand, within ABIE41_RS03795 at 790.291 kb on + strand, within ABIE41_RS03795 at 790.291 kb on + strand, within ABIE41_RS03795 at 790.291 kb on + strand, within ABIE41_RS03795 at 790.291 kb on + strand, within ABIE41_RS03795 at 790.291 kb on + strand, within ABIE41_RS03795 at 790.291 kb on + strand, within ABIE41_RS03795 at 790.292 kb on - strand, within ABIE41_RS03795 at 790.292 kb on - strand, within ABIE41_RS03795 at 790.292 kb on - strand, within ABIE41_RS03795 at 790.292 kb on - strand, within ABIE41_RS03795 at 790.292 kb on - strand, within ABIE41_RS03795 at 790.292 kb on - strand, within ABIE41_RS03795 at 790.292 kb on - strand, within ABIE41_RS03795 at 790.292 kb on - strand, within ABIE41_RS03795
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 788,622 - ABIE41_RS03780 0.36 +1.1 788,661 + ABIE41_RS03780 0.41 -0.2 788,662 - ABIE41_RS03780 0.41 -0.8 788,662 - ABIE41_RS03780 0.41 -0.4 788,749 + ABIE41_RS03780 0.50 -0.3 788,754 + ABIE41_RS03780 0.51 -0.6 788,754 + ABIE41_RS03780 0.51 +1.5 788,754 + ABIE41_RS03780 0.51 -0.2 788,889 + ABIE41_RS03780 0.66 -0.1 788,890 - ABIE41_RS03780 0.66 -3.0 789,224 + ABIE41_RS03785 0.20 -0.3 789,224 + ABIE41_RS03785 0.20 +0.3 789,224 + ABIE41_RS03785 0.20 -0.7 789,225 - ABIE41_RS03785 0.21 +0.3 789,225 - ABIE41_RS03785 0.21 -0.4 789,225 - ABIE41_RS03785 0.21 -0.5 789,225 - ABIE41_RS03785 0.21 +0.1 789,227 + ABIE41_RS03785 0.23 +0.1 789,257 + ABIE41_RS03785 0.47 +1.3 789,576 + ABIE41_RS03790 0.41 +0.8 789,577 - ABIE41_RS03790 0.41 -0.2 789,618 + ABIE41_RS03790 0.50 -0.1 789,618 + ABIE41_RS03790 0.50 +0.4 789,630 + ABIE41_RS03790 0.53 -0.4 789,631 - ABIE41_RS03790 0.53 -0.8 789,714 + ABIE41_RS03790 0.71 -0.0 789,714 + ABIE41_RS03790 0.71 -2.0 789,715 - ABIE41_RS03790 0.71 -0.3 789,715 - ABIE41_RS03790 0.71 -0.4 789,715 - ABIE41_RS03790 0.71 -2.3 789,715 - ABIE41_RS03790 0.71 -0.2 789,964 + -0.7 789,965 - -0.5 789,965 - +0.1 789,965 - +0.7 790,044 + -1.1 790,044 + -0.7 790,044 + +1.9 790,044 + +0.0 790,044 + -0.3 790,045 - -1.4 790,045 - -1.5 790,045 - -0.4 790,291 + ABIE41_RS03795 0.27 +0.4 790,291 + ABIE41_RS03795 0.27 -0.1 790,291 + ABIE41_RS03795 0.27 -0.3 790,291 + ABIE41_RS03795 0.27 +1.7 790,291 + ABIE41_RS03795 0.27 -0.3 790,291 + ABIE41_RS03795 0.27 -1.9 790,291 + ABIE41_RS03795 0.27 +0.3 790,291 + ABIE41_RS03795 0.27 +1.2 790,291 + ABIE41_RS03795 0.27 +0.7 790,291 + ABIE41_RS03795 0.27 -0.1 790,292 - ABIE41_RS03795 0.28 +0.6 790,292 - ABIE41_RS03795 0.28 +0.8 790,292 - ABIE41_RS03795 0.28 +1.4 790,292 - ABIE41_RS03795 0.28 +1.1 790,292 - ABIE41_RS03795 0.28 -0.1 790,292 - ABIE41_RS03795 0.28 +0.0 790,292 - ABIE41_RS03795 0.28 -1.6 790,292 - ABIE41_RS03795 0.28 -0.0
Or see this region's nucleotide sequence