Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27565

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27560 and ABID97_RS27565 are separated by 267 nucleotidesABID97_RS27565 and ABID97_RS27570 overlap by 1 nucleotidesABID97_RS27570 and ABID97_RS27575 overlap by 4 nucleotides ABID97_RS27560: ABID97_RS27560 - ISNCY family transposase, at 429,306 to 430,721 _RS27560 ABID97_RS27565: ABID97_RS27565 - ABC transporter ATP-binding protein, at 430,989 to 431,711 _RS27565 ABID97_RS27570: ABID97_RS27570 - ABC transporter ATP-binding protein, at 431,711 to 432,574 _RS27570 ABID97_RS27575: ABID97_RS27575 - high-affinity branched-chain amino acid ABC transporter permease LivM, at 432,571 to 433,890 _RS27575 Position (kb) 430 431 432Strain fitness (log2 ratio) -1 0 1at 430.975 kb on - strandat 431.099 kb on - strand, within ABID97_RS27565at 431.159 kb on + strand, within ABID97_RS27565at 431.159 kb on + strand, within ABID97_RS27565at 431.209 kb on + strand, within ABID97_RS27565at 431.210 kb on - strand, within ABID97_RS27565at 431.555 kb on + strand, within ABID97_RS27565at 432.402 kb on + strand, within ABID97_RS27570at 432.403 kb on - strand, within ABID97_RS27570

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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430,975 - +0.6
431,099 - ABID97_RS27565 0.15 -0.1
431,159 + ABID97_RS27565 0.24 +0.6
431,159 + ABID97_RS27565 0.24 +0.8
431,209 + ABID97_RS27565 0.30 +1.1
431,210 - ABID97_RS27565 0.31 +0.0
431,555 + ABID97_RS27565 0.78 +0.3
432,402 + ABID97_RS27570 0.80 +0.1
432,403 - ABID97_RS27570 0.80 -0.7

Or see this region's nucleotide sequence