Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27375

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27365 and ABID97_RS27370 are separated by 148 nucleotidesABID97_RS27370 and ABID97_RS27375 are separated by 13 nucleotidesABID97_RS27375 and ABID97_RS27380 overlap by 4 nucleotidesABID97_RS27380 and ABID97_RS27385 overlap by 4 nucleotides ABID97_RS27365: ABID97_RS27365 - nitrogen assimilation transcriptional regulator NAC, at 391,160 to 392,098 _RS27365 ABID97_RS27370: ABID97_RS27370 - acetyl-CoA carboxylase biotin carboxyl carrier protein subunit, at 392,247 to 392,681 _RS27370 ABID97_RS27375: ABID97_RS27375 - acetyl-CoA carboxylase biotin carboxylase subunit, at 392,695 to 394,047 _RS27375 ABID97_RS27380: ABID97_RS27380 - 5-oxoprolinase subunit PxpB, at 394,044 to 394,715 _RS27380 ABID97_RS27385: ABID97_RS27385 - biotin-dependent carboxyltransferase family protein, at 394,712 to 395,701 _RS27385 Position (kb) 392 393 394 395Strain fitness (log2 ratio) -2 -1 0 1at 391.749 kb on - strand, within ABID97_RS27365at 392.313 kb on + strand, within ABID97_RS27370at 394.444 kb on - strand, within ABID97_RS27380

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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391,749 - ABID97_RS27365 0.63 +0.8
392,313 + ABID97_RS27370 0.15 -0.3
394,444 - ABID97_RS27380 0.60 -2.0

Or see this region's nucleotide sequence