Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26435

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26425 and ABID97_RS26430 are separated by 31 nucleotidesABID97_RS26430 and ABID97_RS26435 overlap by 11 nucleotidesABID97_RS26435 and ABID97_RS26440 are separated by 45 nucleotides ABID97_RS26425: ABID97_RS26425 - ABC transporter ATP-binding protein, at 204,129 to 204,629 _RS26425 ABID97_RS26430: ABID97_RS26430 - SDR family oxidoreductase, at 204,661 to 205,362 _RS26430 ABID97_RS26435: ABID97_RS26435 - tripartite tricarboxylate transporter substrate binding protein, at 205,352 to 206,323 _RS26435 ABID97_RS26440: ABID97_RS26440 - dihydrodipicolinate synthase family protein, at 206,369 to 207,307 _RS26440 Position (kb) 205 206 207Strain fitness (log2 ratio) -1 0 1at 204.438 kb on + strand, within ABID97_RS26425at 204.439 kb on - strand, within ABID97_RS26425at 204.465 kb on + strand, within ABID97_RS26425at 204.465 kb on + strand, within ABID97_RS26425at 204.554 kb on + strand, within ABID97_RS26425at 205.576 kb on - strand, within ABID97_RS26435at 205.767 kb on + strand, within ABID97_RS26435at 205.768 kb on - strand, within ABID97_RS26435at 205.884 kb on + strand, within ABID97_RS26435at 206.055 kb on + strand, within ABID97_RS26435at 206.485 kb on - strand, within ABID97_RS26440

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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204,438 + ABID97_RS26425 0.62 +0.6
204,439 - ABID97_RS26425 0.62 +0.6
204,465 + ABID97_RS26425 0.67 +1.3
204,465 + ABID97_RS26425 0.67 -0.2
204,554 + ABID97_RS26425 0.85 +1.0
205,576 - ABID97_RS26435 0.23 +0.3
205,767 + ABID97_RS26435 0.43 +0.4
205,768 - ABID97_RS26435 0.43 +0.3
205,884 + ABID97_RS26435 0.55 -0.0
206,055 + ABID97_RS26435 0.72 -0.7
206,485 - ABID97_RS26440 0.12 -0.5

Or see this region's nucleotide sequence