Experiment: Gly-Glu (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25630 and ABID97_RS25635 are separated by 79 nucleotides ABID97_RS25635 and ABID97_RS25640 are separated by 45 nucleotides ABID97_RS25640 and ABID97_RS25645 are separated by 82 nucleotides
ABID97_RS25630: ABID97_RS25630 - HupE/UreJ family protein, at 45,279 to 46,430
_RS25630
ABID97_RS25635: ABID97_RS25635 - nickel-responsive transcriptional regulator NikR, at 46,510 to 46,992
_RS25635
ABID97_RS25640: ABID97_RS25640 - GntR family transcriptional regulator, at 47,038 to 47,733
_RS25640
ABID97_RS25645: ABID97_RS25645 - L-arabinonate dehydratase, at 47,816 to 49,543
_RS25645
Position (kb) 46
47 Strain fitness (log2 ratio) -1
0
1
2 at 45.528 kb on + strand, within ABID97_RS25630 at 45.529 kb on - strand, within ABID97_RS25630 at 46.490 kb on + strand at 46.491 kb on - strand at 46.696 kb on + strand, within ABID97_RS25635 at 46.799 kb on + strand, within ABID97_RS25635 at 47.035 kb on + strand at 47.035 kb on + strand at 47.297 kb on + strand, within ABID97_RS25640 at 47.297 kb on + strand, within ABID97_RS25640 at 47.297 kb on + strand, within ABID97_RS25640 at 47.298 kb on - strand, within ABID97_RS25640 at 47.298 kb on - strand, within ABID97_RS25640 at 47.828 kb on + strand at 47.829 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-Glu (C) remove 45,528 + ABID97_RS25630 0.22 +0.5 45,529 - ABID97_RS25630 0.22 +0.1 46,490 + +1.9 46,491 - +0.6 46,696 + ABID97_RS25635 0.39 +0.2 46,799 + ABID97_RS25635 0.60 -0.2 47,035 + +0.3 47,035 + +1.6 47,297 + ABID97_RS25640 0.37 -0.2 47,297 + ABID97_RS25640 0.37 -0.1 47,297 + ABID97_RS25640 0.37 -0.8 47,298 - ABID97_RS25640 0.37 -0.8 47,298 - ABID97_RS25640 0.37 -0.4 47,828 + +0.3 47,829 - +0.0
Or see this region's nucleotide sequence