Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25335

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25325 and ABID97_RS25330 overlap by 4 nucleotidesABID97_RS25330 and ABID97_RS25335 are separated by 11 nucleotidesABID97_RS25335 and ABID97_RS25340 are separated by 17 nucleotides ABID97_RS25325: ABID97_RS25325 - ABC transporter ATP-binding protein, at 5,247,436 to 5,248,266 _RS25325 ABID97_RS25330: ABID97_RS25330 - ABC transporter permease, at 5,248,263 to 5,249,069 _RS25330 ABID97_RS25335: ABID97_RS25335 - FAD-binding oxidoreductase, at 5,249,081 to 5,250,454 _RS25335 ABID97_RS25340: ABID97_RS25340 - apolipoprotein N-acyltransferase, at 5,250,472 to 5,252,061 _RS25340 Position (kb) 5249 5250 5251Strain fitness (log2 ratio) -2 -1 0 1at 5248.657 kb on + strand, within ABID97_RS25330at 5248.658 kb on - strand, within ABID97_RS25330at 5248.741 kb on - strand, within ABID97_RS25330at 5248.741 kb on - strand, within ABID97_RS25330at 5248.741 kb on - strand, within ABID97_RS25330at 5248.741 kb on - strand, within ABID97_RS25330at 5248.741 kb on - strand, within ABID97_RS25330at 5248.809 kb on + strand, within ABID97_RS25330at 5248.809 kb on + strand, within ABID97_RS25330at 5248.912 kb on - strand, within ABID97_RS25330at 5249.336 kb on + strand, within ABID97_RS25335at 5249.336 kb on + strand, within ABID97_RS25335at 5249.337 kb on - strand, within ABID97_RS25335at 5249.387 kb on + strand, within ABID97_RS25335at 5249.388 kb on - strand, within ABID97_RS25335at 5249.388 kb on - strand, within ABID97_RS25335at 5249.388 kb on - strand, within ABID97_RS25335at 5249.507 kb on + strand, within ABID97_RS25335at 5249.507 kb on + strand, within ABID97_RS25335at 5249.508 kb on - strand, within ABID97_RS25335at 5249.570 kb on + strand, within ABID97_RS25335at 5249.570 kb on + strand, within ABID97_RS25335at 5249.571 kb on - strand, within ABID97_RS25335at 5249.571 kb on - strand, within ABID97_RS25335at 5249.966 kb on + strand, within ABID97_RS25335at 5249.966 kb on + strand, within ABID97_RS25335at 5249.967 kb on - strand, within ABID97_RS25335at 5249.967 kb on - strand, within ABID97_RS25335at 5249.967 kb on - strand, within ABID97_RS25335at 5249.967 kb on - strand, within ABID97_RS25335at 5249.985 kb on - strand, within ABID97_RS25335at 5250.090 kb on - strand, within ABID97_RS25335at 5250.863 kb on + strand, within ABID97_RS25340at 5251.022 kb on + strand, within ABID97_RS25340at 5251.023 kb on - strand, within ABID97_RS25340at 5251.023 kb on - strand, within ABID97_RS25340at 5251.023 kb on - strand, within ABID97_RS25340at 5251.028 kb on + strand, within ABID97_RS25340at 5251.028 kb on + strand, within ABID97_RS25340at 5251.028 kb on + strand, within ABID97_RS25340at 5251.073 kb on + strand, within ABID97_RS25340at 5251.073 kb on + strand, within ABID97_RS25340at 5251.073 kb on + strand, within ABID97_RS25340at 5251.073 kb on + strand, within ABID97_RS25340at 5251.073 kb on + strand, within ABID97_RS25340at 5251.073 kb on + strand, within ABID97_RS25340at 5251.073 kb on + strand, within ABID97_RS25340at 5251.074 kb on - strand, within ABID97_RS25340at 5251.074 kb on - strand, within ABID97_RS25340

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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5,248,657 + ABID97_RS25330 0.49 -0.3
5,248,658 - ABID97_RS25330 0.49 -0.2
5,248,741 - ABID97_RS25330 0.59 -0.2
5,248,741 - ABID97_RS25330 0.59 +0.3
5,248,741 - ABID97_RS25330 0.59 +0.6
5,248,741 - ABID97_RS25330 0.59 -0.2
5,248,741 - ABID97_RS25330 0.59 -0.6
5,248,809 + ABID97_RS25330 0.68 +0.8
5,248,809 + ABID97_RS25330 0.68 +0.1
5,248,912 - ABID97_RS25330 0.80 -0.0
5,249,336 + ABID97_RS25335 0.19 -0.6
5,249,336 + ABID97_RS25335 0.19 -0.8
5,249,337 - ABID97_RS25335 0.19 +0.1
5,249,387 + ABID97_RS25335 0.22 -0.1
5,249,388 - ABID97_RS25335 0.22 -1.0
5,249,388 - ABID97_RS25335 0.22 -0.5
5,249,388 - ABID97_RS25335 0.22 -0.2
5,249,507 + ABID97_RS25335 0.31 +0.2
5,249,507 + ABID97_RS25335 0.31 -0.3
5,249,508 - ABID97_RS25335 0.31 -0.9
5,249,570 + ABID97_RS25335 0.36 +0.3
5,249,570 + ABID97_RS25335 0.36 -0.4
5,249,571 - ABID97_RS25335 0.36 -0.9
5,249,571 - ABID97_RS25335 0.36 -0.5
5,249,966 + ABID97_RS25335 0.64 +0.0
5,249,966 + ABID97_RS25335 0.64 +0.5
5,249,967 - ABID97_RS25335 0.64 +0.0
5,249,967 - ABID97_RS25335 0.64 +0.0
5,249,967 - ABID97_RS25335 0.64 -0.2
5,249,967 - ABID97_RS25335 0.64 +0.3
5,249,985 - ABID97_RS25335 0.66 -0.1
5,250,090 - ABID97_RS25335 0.73 -0.4
5,250,863 + ABID97_RS25340 0.25 -0.2
5,251,022 + ABID97_RS25340 0.35 -0.6
5,251,023 - ABID97_RS25340 0.35 -2.6
5,251,023 - ABID97_RS25340 0.35 +0.1
5,251,023 - ABID97_RS25340 0.35 -1.6
5,251,028 + ABID97_RS25340 0.35 -0.3
5,251,028 + ABID97_RS25340 0.35 -0.3
5,251,028 + ABID97_RS25340 0.35 -1.5
5,251,073 + ABID97_RS25340 0.38 -1.5
5,251,073 + ABID97_RS25340 0.38 +0.7
5,251,073 + ABID97_RS25340 0.38 +0.1
5,251,073 + ABID97_RS25340 0.38 +0.1
5,251,073 + ABID97_RS25340 0.38 -2.4
5,251,073 + ABID97_RS25340 0.38 -2.3
5,251,073 + ABID97_RS25340 0.38 -2.1
5,251,074 - ABID97_RS25340 0.38 -1.3
5,251,074 - ABID97_RS25340 0.38 -1.2

Or see this region's nucleotide sequence