Experiment: Gly-Glu (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25310 and ABID97_RS25315 are separated by 19 nucleotides ABID97_RS25315 and ABID97_RS25320 are separated by 69 nucleotides ABID97_RS25320 and ABID97_RS25325 are separated by 10 nucleotides ABID97_RS25325 and ABID97_RS25330 overlap by 4 nucleotides
ABID97_RS25310: ABID97_RS25310 - amidohydrolase family protein, at 5,244,209 to 5,245,486
_RS25310
ABID97_RS25315: ABID97_RS25315 - creatininase family protein, at 5,245,506 to 5,246,369
_RS25315
ABID97_RS25320: ABID97_RS25320 - ABC transporter substrate-binding protein, at 5,246,439 to 5,247,425
_RS25320
ABID97_RS25325: ABID97_RS25325 - ABC transporter ATP-binding protein, at 5,247,436 to 5,248,266
_RS25325
ABID97_RS25330: ABID97_RS25330 - ABC transporter permease, at 5,248,263 to 5,249,069
_RS25330
Position (kb) 5246
5247
5248 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5245.518 kb on + strand at 5245.518 kb on + strand at 5245.545 kb on + strand at 5245.546 kb on - strand at 5245.740 kb on + strand, within ABID97_RS25315 at 5245.740 kb on + strand, within ABID97_RS25315 at 5245.741 kb on - strand, within ABID97_RS25315 at 5245.741 kb on - strand, within ABID97_RS25315 at 5245.741 kb on - strand, within ABID97_RS25315 at 5245.741 kb on - strand, within ABID97_RS25315 at 5245.836 kb on + strand, within ABID97_RS25315 at 5246.355 kb on + strand at 5246.355 kb on + strand at 5246.356 kb on - strand at 5246.356 kb on - strand at 5246.529 kb on + strand at 5246.529 kb on + strand at 5246.529 kb on + strand at 5246.530 kb on - strand at 5246.530 kb on - strand at 5246.530 kb on - strand at 5246.545 kb on - strand, within ABID97_RS25320 at 5246.571 kb on + strand, within ABID97_RS25320 at 5246.571 kb on + strand, within ABID97_RS25320 at 5246.572 kb on - strand, within ABID97_RS25320 at 5246.595 kb on + strand, within ABID97_RS25320 at 5246.596 kb on - strand, within ABID97_RS25320 at 5246.596 kb on - strand, within ABID97_RS25320 at 5246.596 kb on - strand, within ABID97_RS25320 at 5246.596 kb on - strand, within ABID97_RS25320 at 5246.596 kb on - strand, within ABID97_RS25320 at 5246.916 kb on + strand, within ABID97_RS25320 at 5246.916 kb on + strand, within ABID97_RS25320 at 5246.917 kb on - strand, within ABID97_RS25320 at 5246.917 kb on - strand, within ABID97_RS25320 at 5247.055 kb on - strand, within ABID97_RS25320 at 5247.055 kb on - strand, within ABID97_RS25320 at 5247.150 kb on + strand, within ABID97_RS25320 at 5247.225 kb on + strand, within ABID97_RS25320 at 5247.226 kb on - strand, within ABID97_RS25320 at 5247.324 kb on + strand, within ABID97_RS25320 at 5247.324 kb on + strand, within ABID97_RS25320 at 5247.384 kb on + strand at 5247.384 kb on + strand at 5247.385 kb on - strand at 5247.520 kb on + strand, within ABID97_RS25325 at 5247.520 kb on + strand, within ABID97_RS25325 at 5247.521 kb on - strand, within ABID97_RS25325
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-Glu (C) remove 5,245,518 + +0.0 5,245,518 + -0.3 5,245,545 + -2.6 5,245,546 - +0.1 5,245,740 + ABID97_RS25315 0.27 -1.1 5,245,740 + ABID97_RS25315 0.27 +0.0 5,245,741 - ABID97_RS25315 0.27 -0.2 5,245,741 - ABID97_RS25315 0.27 -0.6 5,245,741 - ABID97_RS25315 0.27 -0.7 5,245,741 - ABID97_RS25315 0.27 -0.3 5,245,836 + ABID97_RS25315 0.38 -1.0 5,246,355 + -4.6 5,246,355 + -3.4 5,246,356 - -0.1 5,246,356 - -0.1 5,246,529 + -1.0 5,246,529 + -0.3 5,246,529 + -0.4 5,246,530 - +0.1 5,246,530 - +0.5 5,246,530 - +0.1 5,246,545 - ABID97_RS25320 0.11 +0.4 5,246,571 + ABID97_RS25320 0.13 -1.6 5,246,571 + ABID97_RS25320 0.13 -0.3 5,246,572 - ABID97_RS25320 0.13 -0.3 5,246,595 + ABID97_RS25320 0.16 +0.2 5,246,596 - ABID97_RS25320 0.16 -0.5 5,246,596 - ABID97_RS25320 0.16 -0.5 5,246,596 - ABID97_RS25320 0.16 -0.8 5,246,596 - ABID97_RS25320 0.16 +1.1 5,246,596 - ABID97_RS25320 0.16 -0.5 5,246,916 + ABID97_RS25320 0.48 -0.6 5,246,916 + ABID97_RS25320 0.48 +0.8 5,246,917 - ABID97_RS25320 0.48 +0.6 5,246,917 - ABID97_RS25320 0.48 -0.0 5,247,055 - ABID97_RS25320 0.62 -0.1 5,247,055 - ABID97_RS25320 0.62 -1.5 5,247,150 + ABID97_RS25320 0.72 -0.3 5,247,225 + ABID97_RS25320 0.80 +1.3 5,247,226 - ABID97_RS25320 0.80 +0.0 5,247,324 + ABID97_RS25320 0.90 +0.1 5,247,324 + ABID97_RS25320 0.90 -0.0 5,247,384 + +0.3 5,247,384 + -0.4 5,247,385 - +1.1 5,247,520 + ABID97_RS25325 0.10 +0.6 5,247,520 + ABID97_RS25325 0.10 +0.7 5,247,521 - ABID97_RS25325 0.10 -0.4
Or see this region's nucleotide sequence