Strain Fitness in Variovorax sp. OAS795 around ABID97_RS22290

Experiment: Gly-Glu (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS22280 and ABID97_RS22285 are separated by 5 nucleotidesABID97_RS22285 and ABID97_RS22290 are separated by 107 nucleotidesABID97_RS22290 and ABID97_RS22295 are separated by 162 nucleotidesABID97_RS22295 and ABID97_RS22300 are separated by 11 nucleotides ABID97_RS22280: ABID97_RS22280 - C4-dicarboxylate transporter DctA, at 4,616,386 to 4,617,720 _RS22280 ABID97_RS22285: ABID97_RS22285 - GntR family transcriptional regulator, at 4,617,726 to 4,618,430 _RS22285 ABID97_RS22290: ABID97_RS22290 - AI-2E family transporter, at 4,618,538 to 4,619,620 _RS22290 ABID97_RS22295: ABID97_RS22295 - DUF2141 domain-containing protein, at 4,619,783 to 4,620,214 _RS22295 ABID97_RS22300: ABID97_RS22300 - carotenoid oxygenase family protein, at 4,620,226 to 4,621,722 _RS22300 Position (kb) 4618 4619 4620Strain fitness (log2 ratio) -2 -1 0 1at 4617.925 kb on - strand, within ABID97_RS22285at 4618.212 kb on + strand, within ABID97_RS22285at 4618.521 kb on + strandat 4618.537 kb on + strandat 4618.850 kb on + strand, within ABID97_RS22290at 4618.850 kb on + strand, within ABID97_RS22290at 4619.045 kb on + strand, within ABID97_RS22290at 4619.046 kb on - strand, within ABID97_RS22290at 4619.055 kb on - strand, within ABID97_RS22290at 4619.132 kb on + strand, within ABID97_RS22290at 4619.333 kb on + strand, within ABID97_RS22290at 4619.333 kb on + strand, within ABID97_RS22290at 4619.333 kb on + strand, within ABID97_RS22290at 4619.333 kb on + strand, within ABID97_RS22290at 4619.334 kb on - strand, within ABID97_RS22290at 4619.334 kb on - strand, within ABID97_RS22290at 4619.334 kb on - strand, within ABID97_RS22290at 4619.334 kb on - strand, within ABID97_RS22290at 4619.337 kb on - strand, within ABID97_RS22290at 4619.912 kb on + strand, within ABID97_RS22295at 4619.924 kb on + strand, within ABID97_RS22295at 4619.925 kb on - strand, within ABID97_RS22295at 4619.925 kb on - strand, within ABID97_RS22295at 4620.484 kb on + strand, within ABID97_RS22300

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
remove
4,617,925 - ABID97_RS22285 0.28 -0.8
4,618,212 + ABID97_RS22285 0.69 -0.7
4,618,521 + +0.2
4,618,537 + +0.2
4,618,850 + ABID97_RS22290 0.29 -0.5
4,618,850 + ABID97_RS22290 0.29 -1.2
4,619,045 + ABID97_RS22290 0.47 -0.4
4,619,046 - ABID97_RS22290 0.47 -0.5
4,619,055 - ABID97_RS22290 0.48 -0.7
4,619,132 + ABID97_RS22290 0.55 -2.1
4,619,333 + ABID97_RS22290 0.73 +0.5
4,619,333 + ABID97_RS22290 0.73 -0.7
4,619,333 + ABID97_RS22290 0.73 -2.0
4,619,333 + ABID97_RS22290 0.73 -0.2
4,619,334 - ABID97_RS22290 0.73 +0.1
4,619,334 - ABID97_RS22290 0.73 +0.0
4,619,334 - ABID97_RS22290 0.73 -0.8
4,619,334 - ABID97_RS22290 0.73 +0.4
4,619,337 - ABID97_RS22290 0.74 +0.0
4,619,912 + ABID97_RS22295 0.30 -1.2
4,619,924 + ABID97_RS22295 0.33 -0.4
4,619,925 - ABID97_RS22295 0.33 +0.7
4,619,925 - ABID97_RS22295 0.33 -0.4
4,620,484 + ABID97_RS22300 0.17 -0.8

Or see this region's nucleotide sequence