Strain Fitness in Variovorax sp. OAS795 around ABID97_RS21690

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS21680 and ABID97_RS21685 are separated by 44 nucleotidesABID97_RS21685 and ABID97_RS21690 are separated by 7 nucleotidesABID97_RS21690 and ABID97_RS21695 are separated by 9 nucleotidesABID97_RS21695 and ABID97_RS21700 are separated by 5 nucleotides ABID97_RS21680: ABID97_RS21680 - UDP-N-acetylmuramate dehydrogenase, at 4,484,448 to 4,485,500 _RS21680 ABID97_RS21685: ABID97_RS21685 - YajQ family cyclic di-GMP-binding protein, at 4,485,545 to 4,486,030 _RS21685 ABID97_RS21690: ABID97_RS21690 - retropepsin-like aspartic protease, at 4,486,038 to 4,486,679 _RS21690 ABID97_RS21695: ABID97_RS21695 - RidA family protein, at 4,486,689 to 4,487,042 _RS21695 ABID97_RS21700: ABID97_RS21700 - glycerol-3-phosphate 1-O-acyltransferase PlsY, at 4,487,048 to 4,487,683 _RS21700 Position (kb) 4486 4487Strain fitness (log2 ratio) -1 0 1at 4486.458 kb on + strand, within ABID97_RS21690at 4486.458 kb on + strand, within ABID97_RS21690at 4486.459 kb on - strand, within ABID97_RS21690at 4486.459 kb on - strand, within ABID97_RS21690at 4486.459 kb on - strand, within ABID97_RS21690at 4486.557 kb on + strand, within ABID97_RS21690at 4486.557 kb on + strand, within ABID97_RS21690at 4486.557 kb on + strand, within ABID97_RS21690at 4486.557 kb on + strand, within ABID97_RS21690at 4486.557 kb on + strand, within ABID97_RS21690at 4486.558 kb on - strand, within ABID97_RS21690at 4486.558 kb on - strand, within ABID97_RS21690at 4486.558 kb on - strand, within ABID97_RS21690at 4486.558 kb on - strand, within ABID97_RS21690at 4486.558 kb on - strand, within ABID97_RS21690at 4486.558 kb on - strand, within ABID97_RS21690at 4486.558 kb on - strand, within ABID97_RS21690at 4486.558 kb on - strand, within ABID97_RS21690at 4486.558 kb on - strand, within ABID97_RS21690at 4486.675 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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4,486,458 + ABID97_RS21690 0.65 -0.1
4,486,458 + ABID97_RS21690 0.65 -0.3
4,486,459 - ABID97_RS21690 0.66 -0.8
4,486,459 - ABID97_RS21690 0.66 +0.2
4,486,459 - ABID97_RS21690 0.66 -1.5
4,486,557 + ABID97_RS21690 0.81 -0.3
4,486,557 + ABID97_RS21690 0.81 -0.1
4,486,557 + ABID97_RS21690 0.81 +0.4
4,486,557 + ABID97_RS21690 0.81 +0.2
4,486,557 + ABID97_RS21690 0.81 -0.9
4,486,558 - ABID97_RS21690 0.81 -0.2
4,486,558 - ABID97_RS21690 0.81 +0.1
4,486,558 - ABID97_RS21690 0.81 -0.3
4,486,558 - ABID97_RS21690 0.81 -0.1
4,486,558 - ABID97_RS21690 0.81 -0.1
4,486,558 - ABID97_RS21690 0.81 -0.7
4,486,558 - ABID97_RS21690 0.81 +0.9
4,486,558 - ABID97_RS21690 0.81 +0.1
4,486,558 - ABID97_RS21690 0.81 -0.1
4,486,675 - +1.0

Or see this region's nucleotide sequence