Strain Fitness in Variovorax sp. OAS795 around ABID97_RS21525

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS21520 and ABID97_RS21525 are separated by 4 nucleotidesABID97_RS21525 and ABID97_RS21530 are separated by 229 nucleotides ABID97_RS21520: ABID97_RS21520 - plasmid replication/partition related protein, at 4,457,276 to 4,458,133 _RS21520 ABID97_RS21525: ABID97_RS21525 - YSC84-related protein, at 4,458,138 to 4,458,722 _RS21525 ABID97_RS21530: ABID97_RS21530 - DSD1 family PLP-dependent enzyme, at 4,458,952 to 4,460,094 _RS21530 Position (kb) 4458 4459Strain fitness (log2 ratio) -1 0 1 2at 4457.163 kb on + strandat 4457.170 kb on + strandat 4457.170 kb on + strandat 4457.243 kb on + strandat 4457.309 kb on + strandat 4457.309 kb on + strandat 4457.312 kb on - strandat 4458.139 kb on + strandat 4458.140 kb on - strandat 4458.356 kb on - strand, within ABID97_RS21525at 4458.356 kb on - strand, within ABID97_RS21525at 4458.356 kb on - strand, within ABID97_RS21525at 4458.356 kb on - strand, within ABID97_RS21525at 4458.415 kb on + strand, within ABID97_RS21525at 4458.415 kb on + strand, within ABID97_RS21525at 4458.559 kb on + strand, within ABID97_RS21525at 4458.559 kb on + strand, within ABID97_RS21525at 4458.791 kb on - strandat 4458.902 kb on + strandat 4458.939 kb on + strandat 4458.944 kb on + strandat 4459.204 kb on + strand, within ABID97_RS21530at 4459.205 kb on - strand, within ABID97_RS21530at 4459.205 kb on - strand, within ABID97_RS21530at 4459.349 kb on + strand, within ABID97_RS21530at 4459.350 kb on - strand, within ABID97_RS21530at 4459.483 kb on + strand, within ABID97_RS21530at 4459.483 kb on + strand, within ABID97_RS21530at 4459.667 kb on - strand, within ABID97_RS21530

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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4,457,163 + -0.1
4,457,170 + -0.1
4,457,170 + -1.0
4,457,243 + -0.5
4,457,309 + +0.5
4,457,309 + +2.1
4,457,312 - -0.4
4,458,139 + -0.0
4,458,140 - +0.3
4,458,356 - ABID97_RS21525 0.37 +0.7
4,458,356 - ABID97_RS21525 0.37 +0.3
4,458,356 - ABID97_RS21525 0.37 +0.0
4,458,356 - ABID97_RS21525 0.37 -0.2
4,458,415 + ABID97_RS21525 0.47 -0.1
4,458,415 + ABID97_RS21525 0.47 +0.3
4,458,559 + ABID97_RS21525 0.72 -0.5
4,458,559 + ABID97_RS21525 0.72 +0.3
4,458,791 - -0.0
4,458,902 + +0.4
4,458,939 + -0.8
4,458,944 + -0.2
4,459,204 + ABID97_RS21530 0.22 -0.2
4,459,205 - ABID97_RS21530 0.22 +1.1
4,459,205 - ABID97_RS21530 0.22 +0.5
4,459,349 + ABID97_RS21530 0.35 +0.3
4,459,350 - ABID97_RS21530 0.35 +0.2
4,459,483 + ABID97_RS21530 0.46 +0.5
4,459,483 + ABID97_RS21530 0.46 -0.3
4,459,667 - ABID97_RS21530 0.63 +0.1

Or see this region's nucleotide sequence