Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18695

Experiment: Gly-Glu (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS18685 and ABID97_RS18690 are separated by 274 nucleotidesABID97_RS18690 and ABID97_RS18695 overlap by 4 nucleotidesABID97_RS18695 and ABID97_RS18700 are separated by 195 nucleotides ABID97_RS18685: ABID97_RS18685 - tripartite tricarboxylate transporter substrate binding protein, at 3,850,455 to 3,851,414 _RS18685 ABID97_RS18690: ABID97_RS18690 - hypothetical protein, at 3,851,689 to 3,851,865 _RS18690 ABID97_RS18695: ABID97_RS18695 - hypothetical protein, at 3,851,862 to 3,852,029 _RS18695 ABID97_RS18700: ABID97_RS18700 - LysR substrate-binding domain-containing protein, at 3,852,225 to 3,853,157 _RS18700 Position (kb) 3851 3852 3853Strain fitness (log2 ratio) -1 0 1at 3850.949 kb on - strand, within ABID97_RS18685at 3851.145 kb on - strand, within ABID97_RS18685at 3851.250 kb on + strand, within ABID97_RS18685at 3851.458 kb on + strandat 3851.580 kb on + strandat 3851.684 kb on + strandat 3851.685 kb on - strandat 3851.753 kb on - strand, within ABID97_RS18690at 3852.209 kb on - strandat 3852.209 kb on - strandat 3852.719 kb on - strand, within ABID97_RS18700at 3852.924 kb on - strand, within ABID97_RS18700

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
remove
3,850,949 - ABID97_RS18685 0.51 -0.1
3,851,145 - ABID97_RS18685 0.72 -0.2
3,851,250 + ABID97_RS18685 0.83 +0.3
3,851,458 + +0.3
3,851,580 + +0.2
3,851,684 + +0.6
3,851,685 - -0.7
3,851,753 - ABID97_RS18690 0.36 +0.4
3,852,209 - +0.1
3,852,209 - +0.7
3,852,719 - ABID97_RS18700 0.53 -1.0
3,852,924 - ABID97_RS18700 0.75 -0.2

Or see this region's nucleotide sequence