Strain Fitness in Variovorax sp. OAS795 around ABID97_RS14010

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS14005 and ABID97_RS14010 are separated by 60 nucleotidesABID97_RS14010 and ABID97_RS14015 are separated by 1 nucleotidesABID97_RS14015 and ABID97_RS14020 are separated by 63 nucleotidesABID97_RS14020 and ABID97_RS14025 are separated by 11 nucleotides ABID97_RS14005: ABID97_RS14005 - IscS subfamily cysteine desulfurase, at 2,910,033 to 2,911,253 _RS14005 ABID97_RS14010: ABID97_RS14010 - Fe-S cluster assembly scaffold IscU, at 2,911,314 to 2,911,730 _RS14010 ABID97_RS14015: ABID97_RS14015 - iron-sulfur cluster assembly protein IscA, at 2,911,732 to 2,912,055 _RS14015 ABID97_RS14020: ABID97_RS14020 - Fe-S protein assembly co-chaperone HscB, at 2,912,119 to 2,912,637 _RS14020 ABID97_RS14025: ABID97_RS14025 - Fe-S protein assembly chaperone HscA, at 2,912,649 to 2,914,511 _RS14025 Position (kb) 2911 2912Strain fitness (log2 ratio) -1 0 1at 2911.308 kb on + strandat 2911.308 kb on + strandat 2912.635 kb on + strandat 2912.636 kb on - strandat 2912.644 kb on + strandat 2912.644 kb on + strandat 2912.644 kb on + strandat 2912.644 kb on + strandat 2912.645 kb on - strandat 2912.645 kb on - strandat 2912.648 kb on + strandat 2912.648 kb on + strandat 2912.648 kb on + strandat 2912.648 kb on + strandat 2912.648 kb on + strandat 2912.648 kb on + strandat 2912.648 kb on + strandat 2912.648 kb on + strandat 2912.648 kb on + strandat 2912.648 kb on + strandat 2912.648 kb on + strandat 2912.648 kb on + strandat 2912.648 kb on + strandat 2912.660 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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2,911,308 + +0.2
2,911,308 + -0.8
2,912,635 + +0.7
2,912,636 - +0.2
2,912,644 + +0.1
2,912,644 + -0.4
2,912,644 + -0.0
2,912,644 + +0.8
2,912,645 - -0.4
2,912,645 - -1.0
2,912,648 + +1.1
2,912,648 + -0.2
2,912,648 + +0.4
2,912,648 + -1.2
2,912,648 + -0.8
2,912,648 + +1.2
2,912,648 + -0.2
2,912,648 + -0.6
2,912,648 + +0.3
2,912,648 + +0.1
2,912,648 + +0.4
2,912,648 + -0.8
2,912,648 + +0.5
2,912,660 - -1.0

Or see this region's nucleotide sequence