Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12820

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12815 and ABID97_RS12820 overlap by 4 nucleotidesABID97_RS12820 and ABID97_RS12825 are separated by 74 nucleotidesABID97_RS12825 and ABID97_RS12830 overlap by 4 nucleotides ABID97_RS12815: ABID97_RS12815 - PQQ-dependent catabolism-associated beta-propeller protein, at 2,654,753 to 2,655,763 _RS12815 ABID97_RS12820: ABID97_RS12820 - branched-chain amino acid ABC transporter substrate-binding protein, at 2,655,760 to 2,656,938 _RS12820 ABID97_RS12825: ABID97_RS12825 - ABC transporter permease, at 2,657,013 to 2,657,810 _RS12825 ABID97_RS12830: ABID97_RS12830 - tripartite tricarboxylate transporter substrate binding protein, at 2,657,807 to 2,658,802 _RS12830 Position (kb) 2655 2656 2657Strain fitness (log2 ratio) -1 0 1at 2655.122 kb on + strand, within ABID97_RS12815at 2655.122 kb on + strand, within ABID97_RS12815at 2655.123 kb on - strand, within ABID97_RS12815at 2655.123 kb on - strand, within ABID97_RS12815at 2655.248 kb on + strand, within ABID97_RS12815at 2655.248 kb on + strand, within ABID97_RS12815at 2655.651 kb on - strand, within ABID97_RS12815at 2656.454 kb on - strand, within ABID97_RS12820at 2656.919 kb on + strandat 2657.157 kb on + strand, within ABID97_RS12825at 2657.166 kb on + strand, within ABID97_RS12825at 2657.167 kb on - strand, within ABID97_RS12825at 2657.167 kb on - strand, within ABID97_RS12825at 2657.184 kb on + strand, within ABID97_RS12825at 2657.253 kb on + strand, within ABID97_RS12825at 2657.553 kb on + strand, within ABID97_RS12825at 2657.647 kb on - strand, within ABID97_RS12825at 2657.647 kb on - strand, within ABID97_RS12825

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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2,655,122 + ABID97_RS12815 0.36 +0.0
2,655,122 + ABID97_RS12815 0.36 -1.1
2,655,123 - ABID97_RS12815 0.37 -0.8
2,655,123 - ABID97_RS12815 0.37 -0.2
2,655,248 + ABID97_RS12815 0.49 -0.6
2,655,248 + ABID97_RS12815 0.49 -1.7
2,655,651 - ABID97_RS12815 0.89 +0.3
2,656,454 - ABID97_RS12820 0.59 +0.2
2,656,919 + -0.7
2,657,157 + ABID97_RS12825 0.18 -0.2
2,657,166 + ABID97_RS12825 0.19 -0.5
2,657,167 - ABID97_RS12825 0.19 -0.9
2,657,167 - ABID97_RS12825 0.19 +0.4
2,657,184 + ABID97_RS12825 0.21 -0.6
2,657,253 + ABID97_RS12825 0.30 +0.5
2,657,553 + ABID97_RS12825 0.68 -0.1
2,657,647 - ABID97_RS12825 0.79 +0.7
2,657,647 - ABID97_RS12825 0.79 -0.1

Or see this region's nucleotide sequence