Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11695

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11690 and ABID97_RS11695 are separated by 4 nucleotidesABID97_RS11695 and ABID97_RS11700 are separated by 180 nucleotides ABID97_RS11690: ABID97_RS11690 - hydantoinase B/oxoprolinase family protein, at 2,415,229 to 2,418,876 _RS11690 ABID97_RS11695: ABID97_RS11695 - IS481 family transposase, at 2,418,881 to 2,419,831 _RS11695 ABID97_RS11700: ABID97_RS11700 - GntR family transcriptional regulator, at 2,420,012 to 2,420,800 _RS11700 Position (kb) 2418 2419 2420Strain fitness (log2 ratio) -1 0 1 2at 2417.959 kb on + strand, within ABID97_RS11690at 2417.960 kb on - strand, within ABID97_RS11690at 2418.185 kb on - strand, within ABID97_RS11690at 2418.185 kb on - strand, within ABID97_RS11690at 2418.185 kb on - strand, within ABID97_RS11690at 2418.185 kb on - strand, within ABID97_RS11690at 2418.415 kb on + strand, within ABID97_RS11690at 2418.416 kb on - strand, within ABID97_RS11690at 2418.422 kb on - strand, within ABID97_RS11690at 2418.753 kb on - strandat 2419.931 kb on + strandat 2420.318 kb on + strand, within ABID97_RS11700at 2420.331 kb on - strand, within ABID97_RS11700at 2420.583 kb on - strand, within ABID97_RS11700at 2420.583 kb on - strand, within ABID97_RS11700at 2420.780 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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2,417,959 + ABID97_RS11690 0.75 +0.7
2,417,960 - ABID97_RS11690 0.75 +0.8
2,418,185 - ABID97_RS11690 0.81 +2.6
2,418,185 - ABID97_RS11690 0.81 +0.4
2,418,185 - ABID97_RS11690 0.81 -0.6
2,418,185 - ABID97_RS11690 0.81 -0.6
2,418,415 + ABID97_RS11690 0.87 +0.3
2,418,416 - ABID97_RS11690 0.87 -1.0
2,418,422 - ABID97_RS11690 0.88 +1.3
2,418,753 - -0.3
2,419,931 + -0.1
2,420,318 + ABID97_RS11700 0.39 -1.0
2,420,331 - ABID97_RS11700 0.40 -1.0
2,420,583 - ABID97_RS11700 0.72 -1.0
2,420,583 - ABID97_RS11700 0.72 -0.2
2,420,780 + -0.6

Or see this region's nucleotide sequence